chr1 : 99,963,408 – 99,963,825
417 bp 45 TFs 3 linked genes
This 417 bp open chromatin element is linked to ENSG00000228084, SLC35A3, and ENSG00000283761 and is bound by 45 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000228084 6.1 kb Proximal Proximity
SLC35A3 6.2 kb Proximal Proximity
ENSG00000283761 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:99,958,408 – 99,968,825
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 13 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 328 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 235 bp overlap
ChIP VCaP GSE148358.AR.VCaP 175 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 53 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 228 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 130 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 136 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 235 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 169 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 240 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 181 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 255 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 141 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 276 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 196 bp overlap
BRD2 8 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 140 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 140 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 201 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 194 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 194 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 178 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 217 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 258 bp overlap
BRD4 15 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 169 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 169 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 316 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 316 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 417 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 235 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 190 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 195 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 281 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 332 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 387 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 322 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 358 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 274 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 284 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 60 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 158 bp overlap
CLOCK 1 dataset
ChIP BA40_2 GSE96659.CLOCK.BA40_2 148 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 273 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 384 bp overlap
ERG 14 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 94 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 140 bp overlap
ChIP RWPE-1 GSE114241.ERG.RWPE-1 278 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 124 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 124 bp overlap
ChIP VCaP GSE28950.ERG.VCaP 147 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 274 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 106 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 152 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 169 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 118 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 109 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 154 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 157 bp overlap
ESR1 1 dataset
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 235 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 105 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 64 bp overlap
FLI1 2 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 200 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 66 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 299 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 175 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 218 bp overlap
FOXA1 3 datasets
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 257 bp overlap
ChIP primary-prostate-cancer_P4_DSG GSE114737.FOXA1.primary-prostate-cancer_P4_DSG 215 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 185 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 353 bp overlap
ChIP DE DE-FOXA2-1 383 bp overlap
ChIP DE DE-FOXA2-2 362 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 284 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 206 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 157 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 193 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA2 12 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 253 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 295 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 167 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 177 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 353 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 255 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 153 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 277 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 401 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 417 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 304 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 381 bp overlap
GATA3 5 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 144 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 227 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 314 bp overlap
ChIP SK-N-SH ENCFF040SSB 327 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 183 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 191 bp overlap
ChIP DE DE-GATA4-1 417 bp overlap
ChIP DE DE-GATA4-2 417 bp overlap
ChIP foregut GSE117136.GATA4.foregut 346 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 417 bp overlap
ChIP DE DE-GATA6-2 417 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 268 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 417 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 409 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 417 bp overlap
HOXB13 3 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 248 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 256 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 242 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 264 bp overlap
HSF1 1 dataset
ChIP HCT-15 GSE38901.HSF1.HCT-15 168 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 109 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 52 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 243 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 329 bp overlap
NFATC2 1 dataset
ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 190 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 198 bp overlap
RELA 6 datasets
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 213 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 152 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 189 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 215 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 236 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 417 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 321 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 417 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 417 bp overlap
SMAD3 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 143 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 276 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 160 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 181 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 370 bp overlap
STAT3 2 datasets
ChIP SUM159PT GSE152203.STAT3.SUM159PT 138 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 203 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 211 bp overlap
TP63 2 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 165 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 197 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 162 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCFF282RUS 67 bp overlap
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