chr5 : 173,653,855 – 173,654,363
508 bp 34 TFs 3 linked genes
This 508 bp open chromatin element is linked to BOD1, LINC01484, and CPEB4 and is bound by 34 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BOD1 37.5 kb Distal Multiome
LINC01484 92.2 kb Distal Multiome
CPEB4 234.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:173,648,855 – 173,659,363
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 124 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 261 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 282 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 138 bp overlap
CBX5 1 dataset
ChIP K562 ENCFF188CYP 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 133 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 289 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP ZR751 GSE72249.FOXA1.ZR751 147 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 402 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 262 bp overlap
ChIP DE DE-GATA6-2 477 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 264 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 121 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 338 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 129 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 180 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 74 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 167 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 257 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 177 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 266 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 234 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 127 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 364 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 113 bp overlap
ChIP K-562 ENCSR000EWI.SETDB1.K-562 131 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 113 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 314 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 333 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 304 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 127 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 208 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 136 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
ZBTB7B 1 dataset
Motif DE_72h DE_72h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_72h DE_72h-ZBTB7C_MA0695.2 8 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 181 bp overlap
ChIP K562 ENCFF255RZG 166 bp overlap
ZNF652 1 dataset
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap