chr5 : 175,688,357 – 175,689,084
727 bp 66 TFs 3 linked genes
This 727 bp open chromatin element is linked to CPLX2, SFXN1, and THOC3 and is bound by 66 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CPLX2 107.9 kb Distal Multiome
SFXN1 210.2 kb Distal Multiome
THOC3 279.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:175,683,357 – 175,694,084
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap
Ar 1 dataset
Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap
CTCF 3 datasets
ChIP H9 ENCFF152GTF 441 bp overlap
ChIP endodermal cell ENCFF471YCZ 176 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 279 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 263 bp overlap
ESR1 1 dataset
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 376 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 258 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 350 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 397 bp overlap
ChIP T98G GSE112240.EZH2.T98G 727 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 635 bp overlap
ChIP DE DE-FOXA2-2 686 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 277 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 653 bp overlap
ChIP DE DE-GATA4-2 701 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 612 bp overlap
ChIP DE DE-GATA6-2 727 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 715 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 727 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 727 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 616 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 727 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 727 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 499 bp overlap
ChIP foregut GSE117136.GATA6.foregut 333 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 229 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
IKZF2 2 datasets
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 370 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 431 bp overlap
KAT7 1 dataset
ChIP MOLM-13 GSE133516.KAT7.MOLM-13 63 bp overlap
KLF1 2 datasets
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF2 2 datasets
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_60h DE_60h-KLF3_MA1516.2 10 bp overlap
Motif DE_72h DE_72h-KLF3_MA1516.2 10 bp overlap
KLF7 2 datasets
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 249 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 246 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Runx1 2 datasets
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 727 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 727 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 727 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 726 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 727 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 727 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 720 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 727 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 595 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 329 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 685 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 339 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 2 datasets
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF4 1 dataset
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
TFAP2A 2 datasets
Motif DE_60h DE_60h-TFAP2A_MA0872.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 4 datasets
Motif DE_60h DE_60h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_60h DE_60h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 4 datasets
Motif DE_60h DE_60h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_60h DE_60h-TFAP2C_MA0815.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0815.1 13 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 2 datasets
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 325 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
ZKSCAN3 2 datasets
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF263 1 dataset
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF418 2 datasets
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zfp809 3 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
Zfx 2 datasets
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap
Znf423 1 dataset
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap