chr6 : 2,984,790 – 2,985,243
453 bp 130 TFs 2 linked genes
This 453 bp open chromatin element is linked to NQO2 and LINC01011 and is bound by 130 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NQO2 3.4 kb Proximal Proximity
LINC01011 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:2,979,790 – 2,990,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 194 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 413 bp overlap
ChIP K562 ENCFF817JQF 453 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 201 bp overlap
BRD4 1 dataset
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 214 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 308 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 164 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 102 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 68 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 153 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 157 bp overlap
CREB3 1 dataset
ChIP K562 ENCFF985QJI 367 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 54 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 122 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 393 bp overlap
ChIP K562 ENCFF403WPG 373 bp overlap
CTCF 4 datasets
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 167 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 132 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 179 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 253 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 421 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 129 bp overlap
EBF3 1 dataset
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 302 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 231 bp overlap
ESR1 2 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 439 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 414 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 201 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 412 bp overlap
Ebf2 1 dataset
Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FIP1L1 2 datasets
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 278 bp overlap
ChIP Hep-G2 GSE120104.FIP1L1.Hep-G2 199 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 278 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 283 bp overlap
FOXP1 1 dataset
ChIP K562 ENCFF954SDY 285 bp overlap
Foxn1 1 dataset
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GATA1 8 datasets
ChIP K-562 GSE107726.GATA1.K-562 234 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 149 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 186 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.GATA1.K-562_MYO1D-Hub_KO 142 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 167 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 152 bp overlap
ChIP K562 ENCFF094CMK 178 bp overlap
ChIP K562 ENCFF876GFS 247 bp overlap
GATA2 13 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 451 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 218 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 107 bp overlap
ChIP K-562 ENCSR257RKC.GATA2.K-562 206 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 105 bp overlap
ChIP K562 ENCFF088XQT 281 bp overlap
ChIP K562 ENCFF513FTZ 220 bp overlap
ChIP K562 ENCFF544PCK 156 bp overlap
ChIP K562 ENCFF830LLA 327 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 321 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 196 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 186 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 249 bp overlap
GATA3 10 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 161 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 189 bp overlap
ChIP MCF-7 ENCFF178GBS 288 bp overlap
ChIP MCF-7 ENCFF352QVM 184 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 213 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 203 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 105 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 203 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 235 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 188 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 186 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 140 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 276 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 249 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 257 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 282 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 151 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 358 bp overlap
ChIP K562 ENCFF919OMP 350 bp overlap
ChIP K562 ENCFF919OMP 409 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 453 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 297 bp overlap
HNF4A 3 datasets
Motif DE_24h DE_24h-HNF4A_MA0114.5 9 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 286 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 177 bp overlap
HNF4G 1 dataset
Motif DE_24h DE_24h-HNF4G_MA0484.3 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 408 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 382 bp overlap
ChIP K562 ENCFF771OHZ 187 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 218 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
JUND 4 datasets
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 138 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 188 bp overlap
ChIP K562 ENCFF336RCR 400 bp overlap
ChIP K562 ENCFF830LVJ 189 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 171 bp overlap
KLF13 1 dataset
ChIP K-562 ENCSR608HVP.KLF13.K-562 450 bp overlap
KLF5 3 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 187 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 141 bp overlap
MAFF 1 dataset
ChIP K-562 ENCSR000EGI.MAFF.K-562 136 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 372 bp overlap
MAFK 1 dataset
ChIP K-562 ENCSR000EGX.MAFK.K-562 151 bp overlap
MAX 4 datasets
ChIP HeLa-S3 ENCFF398RFF 253 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 138 bp overlap
ChIP K562 ENCFF110LJS 338 bp overlap
ChIP K562 ENCFF110LJS 263 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF809XHP 274 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 256 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 392 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 215 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 158 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 171 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 174 bp overlap
NELFE 3 datasets
ChIP HeLa GSE125534.NELFE.HeLa 240 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 194 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 157 bp overlap
NFE2 5 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 176 bp overlap
ChIP K-562 ENCSR552YGL.NFE2.K-562 406 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 107 bp overlap
ChIP K562 ENCFF047YKA 405 bp overlap
ChIP K562 ENCFF163BSI 100 bp overlap
NFE2L2 2 datasets
ChIP HeLa-S3 ENCSR707IUN.NFE2L2.HeLa-S3 137 bp overlap
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 205 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NR4A1 2 datasets
ChIP K-562 ENCSR130PDE.NR4A1.K-562 350 bp overlap
ChIP K562 ENCFF998LHF 423 bp overlap
NRF1 6 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 297 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 306 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 128 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 137 bp overlap
ChIP K562 ENCFF689EWI 192 bp overlap
ChIP K562 ENCFF791UHF 402 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 223 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 453 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 453 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 453 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 244 bp overlap
ChIP K562 ENCFF236IUS 134 bp overlap
POLR2A 4 datasets
ChIP HeLa-S3 ENCFF224LWS 451 bp overlap
ChIP HeLa-S3 ENCFF224LWS 157 bp overlap
ChIP Peyer's patch ENCFF767HVN 248 bp overlap
ChIP Peyer's patch ENCFF990IYL 405 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 311 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 437 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 276 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 139 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 453 bp overlap
PTRF 1 dataset
ChIP K-562 ENCSR126FZN.PTRF.K-562 226 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 207 bp overlap
RCOR1 2 datasets
ChIP K-562 ENCSR000EGC.RCOR1.K-562 126 bp overlap
ChIP K562 ENCFF216EEJ 243 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 232 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 453 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 442 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 453 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 286 bp overlap
ChIP K562 ENCFF506JCB 307 bp overlap
ChIP K562 ENCFF506JCB 447 bp overlap
SMARCB1 3 datasets
ChIP HeLa-S3 ENCFF733PLR 358 bp overlap
ChIP HeLa-S3 ENCFF733PLR 105 bp overlap
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 192 bp overlap
SMARCC1 1 dataset
ChIP HeLa-S3 ENCFF971JGA 345 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 287 bp overlap
SPI1 1 dataset
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 102 bp overlap
SRF 1 dataset
ChIP K-562 ENCSR582IAO.SRF.K-562 243 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 221 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 184 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 134 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCFF556LCN 279 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 157 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 204 bp overlap
ChIP hESC GSE122298.TBP.hESC 139 bp overlap
TCF7L2 4 datasets
ChIP HeLa-S3 ENCFF084KRL 327 bp overlap
ChIP HeLa-S3 ENCFF084KRL 120 bp overlap
ChIP HeLa-S3 ENCFF673QAB 247 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 277 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 141 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 419 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 209 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 227 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 284 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 432 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 276 bp overlap
ZBTB24 2 datasets
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 154 bp overlap
ZBTB6 1 dataset
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 140 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 264 bp overlap
ChIP K562 ENCFF795CMH 272 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 281 bp overlap
ZNF135 1 dataset
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP K562 ENCFF554TVF 232 bp overlap
ZNF24 2 datasets
ChIP K562 ENCFF497GLV 299 bp overlap
ChIP K562 ENCFF497GLV 95 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 164 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 269 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 366 bp overlap
ChIP K562 ENCFF547OSS 453 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 313 bp overlap
ZNF770 1 dataset
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap