chr6 : 3,756,021 – 3,756,176
155 bp 48 TFs 2 linked genes
This 155 bp open chromatin element is linked to PXDC1 and ENSG00000270504 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PXDC1 4.3 kb Proximal Proximity
ENSG00000270504 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:3,751,021 – 3,761,176
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 155 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 155 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 155 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 138 bp overlap
ASCL1 3 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 68 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 62 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 136 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 155 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 155 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 155 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 112 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 155 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 155 bp overlap
BRD4 5 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 155 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 155 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 155 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 155 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 53 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 111 bp overlap
ESR1 46 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 155 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 155 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 129 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 155 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 155 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 155 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 155 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 139 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 155 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 138 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 155 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 155 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 155 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 155 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 132 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 128 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 155 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 155 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 155 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 141 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 135 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 137 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 112 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 134 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 131 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 135 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 155 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 93 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 155 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 134 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 155 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 155 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 155 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 155 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 155 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 155 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 155 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 155 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 155 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 155 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 155 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 155 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 155 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 155 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 155 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 121 bp overlap
FOXA1 17 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 155 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 155 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 155 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 155 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 71 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 55 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 155 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 155 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 75 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 155 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 155 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 155 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 109 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 155 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 150 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 83 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 155 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 155 bp overlap
GATA3 2 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 149 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 155 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 155 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 81 bp overlap
HOXB13 3 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 64 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 99 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 155 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 155 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 155 bp overlap
KDM1A 3 datasets
ChIP H1 ENCFF696SGD 87 bp overlap
ChIP HepG2 ENCFF240UWG 155 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 71 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 155 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 155 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 155 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 155 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 155 bp overlap
ChIP hESC GSE20650.NANOG.hESC 75 bp overlap
ChIP hESC GSE18292.NANOG.hESC 155 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 155 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 155 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 155 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 155 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 155 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 126 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 155 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 155 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 155 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 155 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 155 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 155 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 155 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 155 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 101 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 111 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 155 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 155 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 155 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 155 bp overlap
ChIP hESC GSE18292.SOX2.hESC 147 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 155 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 140 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 98 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 143 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 131 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 155 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 155 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 155 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 120 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 138 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 155 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 155 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 108 bp overlap
ZMYM3 1 dataset
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 96 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF35 1 dataset
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
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