chr6 : 4,925,466 – 4,925,943
477 bp 71 TFs 2 linked genes
This 477 bp open chromatin element is linked to RPP40 and CDYL and is bound by 71 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RPP40 78.3 kb Distal Multiome
CDYL 152.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:4,920,466 – 4,930,943
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 212 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 176 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 272 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 195 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 358 bp overlap
ESR2 2 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 207 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 212 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 104 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 104 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 379 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 336 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 331 bp overlap
ChIP H1 ENCFF696SGD 437 bp overlap
KLF4 1 dataset
ChIP MCF-7 ENCFF948KTQ 91 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 232 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 171 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 285 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 237 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 143 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 381 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 240 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 209 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 194 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 175 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 227 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 192 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 211 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU5F1 14 datasets
ChIP BG03 GSE21614.POU5F1.BG03 189 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 345 bp overlap
ChIP GM23338 ENCFF333SNB 266 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 306 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 276 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 426 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 194 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 175 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 177 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 213 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 273 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 199 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 275 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PPARG 2 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif ES_0h ES_0h-PPARG_MA0066.2 19 bp overlap
Pgr 2 datasets
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm5 2 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 142 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 84 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 204 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 245 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 120 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 301 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 234 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 242 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 204 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 166 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 188 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 104 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 290 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 243 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 185 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 230 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 204 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 193 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 202 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 215 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 411 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 249 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZKSCAN1 2 datasets
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF135 3 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 273 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap