chr6 : 5,438,974 – 5,439,475
501 bp 67 TFs 2 linked genes
This 501 bp open chromatin element is linked to FARS2 and LYRM4 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FARS2 177.7 kb Distal Multiome
LYRM4 178.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:5,433,974 – 5,444,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE43720.AR.LNCaP 136 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 143 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 408 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 140 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 208 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 328 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 198 bp overlap
BRD4 4 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 170 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 375 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 270 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 249 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 140 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 299 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 267 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 243 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 259 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 375 bp overlap
ChIP BLaER1 ENCFF364PUR 271 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 242 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 217 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 289 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 164 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 123 bp overlap
FOXA1 4 datasets
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 79 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 287 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 57 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 139 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 334 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 146 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 246 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 358 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 379 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 387 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 305 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 261 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 148 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 347 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 280 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 369 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 179 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 233 bp overlap
ChIP H1 ENCFF747ZPQ 196 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 501 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 494 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 267 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 501 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 501 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 431 bp overlap
ChIP hESC GSE20650.NANOG.hESC 270 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 199 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 206 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 234 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 251 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 199 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 501 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 254 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 466 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 501 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 198 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 255 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 270 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 171 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 305 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 332 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 230 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 179 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 354 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 254 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 101 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 291 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 501 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 477 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 377 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 286 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 263 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 276 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 297 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 243 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 226 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 333 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 270 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 323 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 313 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 180 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 499 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 208 bp overlap
SOX2 3 datasets
ChIP RENVM GSE49404.SOX2.RENVM 137 bp overlap
ChIP hESC GSE69479.SOX2.hESC 207 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 292 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 258 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 289 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 198 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 133 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 226 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 217 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 169 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 199 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 274 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 183 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 380 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 428 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 204 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 168 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 207 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 284 bp overlap
ZNF343 2 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap