chr6 : 15,038,269 – 15,038,858
589 bp 88 TFs 2 linked genes
This 589 bp open chromatin element is linked to ENSG00000234261 and JARID2 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000234261 16.6 kb Distal Multiome
JARID2 207.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:15,033,269 – 15,043,858
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 247 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 588 bp overlap
ATF2 3 datasets
ChIP H1 ENCFF295GZO 482 bp overlap
ChIP K562 ENCFF139ZZG 88 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 495 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 157 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 170 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCFF555YRB 99 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 280 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 183 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 294 bp overlap
BRD3 2 datasets
ChIP H-1 GSE126661.BRD3.H-1 224 bp overlap
ChIP HEK293T GSE39579.BRD3.HEK293T 208 bp overlap
BRD4 6 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 430 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 468 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 203 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 76 bp overlap
ChIP hESC GSE33281.BRD4.hESC 223 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 260 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 308 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 325 bp overlap
ChIP SK-N-SH ENCFF669KMB 122 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 467 bp overlap
ChIP H1 ENCFF126NLU 507 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 256 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 198 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 200 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 365 bp overlap
CTCF 6 datasets
ChIP BE2C ENCFF757SRF 201 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 105 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 68 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 144 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 91 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 304 bp overlap
ChIP BLaER1 ENCFF364PUR 72 bp overlap
ChIP BLaER1 ENCFF896HSY 302 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 308 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 145 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 400 bp overlap
ChIP hESC GSE17917.EP300.hESC 367 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 122 bp overlap
ChIP MCF-7_E2_30min GSE108883.ESR1.MCF-7_E2_30min 266 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 327 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 55 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 81 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 201 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 138 bp overlap
FOXA1 2 datasets
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 103 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 83 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 325 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 288 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 78 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 100 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 72 bp overlap
GATA6 2 datasets
ChIP AGS GSE51936.GATA6.AGS 90 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 306 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 346 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 93 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 63 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 223 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 242 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 461 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 395 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 487 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 423 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 518 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 488 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 514 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 492 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 279 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 83 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 139 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 218 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 379 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 196 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 474 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 357 bp overlap
MXD4 1 dataset
ChIP WTC11 ENCFF044PLT 62 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 94 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 121 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 442 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 589 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 589 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 310 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 413 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 566 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 435 bp overlap
ChIP hESC GSE20650.NANOG.hESC 304 bp overlap
ChIP hESC GSE18292.NANOG.hESC 355 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 246 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 179 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 374 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 280 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 299 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 589 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 537 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 397 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 289 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 251 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 320 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 324 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 370 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU5F1 12 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 529 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 589 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 226 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 436 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 413 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 383 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 506 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 548 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 332 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 236 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF698EWO 197 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP H1 ENCFF967OJF 120 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 122 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 535 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 589 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 226 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 176 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 182 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 312 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 198 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 344 bp overlap
SMAD2 2 datasets
ChIP hESC GSE29422.SMAD2.hESC 246 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 410 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 502 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 354 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 541 bp overlap
SMAD3 7 datasets
ChIP BG03 GSE21614.SMAD3.BG03 512 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 319 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 350 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 354 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 376 bp overlap
ChIP hESC_DIFF_D0 GSE75297.SMAD3.hESC_DIFF_D0 225 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 251 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 425 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 286 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 470 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 589 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 452 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 589 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 377 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 477 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 566 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 407 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 397 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 352 bp overlap
SPI1 4 datasets
ChIP K-562 GSE70482.SPI1.K-562 222 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 145 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 123 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 130 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 175 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 255 bp overlap
ChIP hESC GSE122298.TBP.hESC 142 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 317 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 282 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 425 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 546 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 326 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 541 bp overlap
ChIP H1 ENCFF778PAX 161 bp overlap
ChIP WTC11 ENCFF114TZS 331 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 437 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 217 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 330 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 413 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 530 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 101 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 101 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 474 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 147 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 445 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 102 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 87 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 171 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 394 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 589 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 423 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 82 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 156 bp overlap
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