chr6 : 18,312,094 – 18,312,753
659 bp 104 TFs 3 linked genes
This 659 bp open chromatin element is linked to DEK, KDM1B, and TPMT and is bound by 104 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DEK 47.9 kb Distal Multiome
KDM1B 157.1 kb Distal Multiome
TPMT 157.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:18,307,094 – 18,317,753
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 315 bp overlap
ChIP K562 ENCFF938UXQ 246 bp overlap
BRD3 2 datasets
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 179 bp overlap
ChIP K-562_IBET151_50nM GSE120715.BRD3.K-562_IBET151_50nM 161 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 238 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 377 bp overlap
ChIP K562 ENCFF673OEZ 247 bp overlap
CEBPA 1 dataset
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CREB1 1 dataset
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 188 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 319 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
EBF1 2 datasets
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 328 bp overlap
EBF3 1 dataset
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
EHF 2 datasets
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 456 bp overlap
ETV1 2 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP ProEs GSE59087.EZH2.ProEs 176 bp overlap
Ebf2 1 dataset
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
Erg 2 datasets
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 176 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 457 bp overlap
ChIP DE DE-FOXA2-2 431 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXH1 2 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Foxl2 2 datasets
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
GABPA 2 datasets
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 305 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 202 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 249 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 532 bp overlap
ChIP DE DE-GATA4-2 585 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 536 bp overlap
ChIP DE DE-GATA6-2 623 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 453 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 411 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 659 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 592 bp overlap
GFI1B 4 datasets
ChIP CD34 GSE52924.GFI1B.CD34 220 bp overlap
ChIP K-562 GSE117944.GFI1B.K-562 232 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 247 bp overlap
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 338 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 518 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 370 bp overlap
ChIP K562 ENCFF928TKZ 227 bp overlap
ChIP K562 ENCFF968WBH 351 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 478 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 389 bp overlap
ChIP K562 ENCFF744ALD 266 bp overlap
ChIP K562 ENCFF919OMP 240 bp overlap
HES7 1 dataset
Motif DE_36h DE_36h-HES7_MA0822.1 12 bp overlap
HLF 1 dataset
Motif DE_36h DE_36h-HLF_MA0043.4 9 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 95 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 517 bp overlap
ChIP K562 ENCFF348IBL 262 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
IRF3 2 datasets
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Ikzf3 2 datasets
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 413 bp overlap
KDM1A 8 datasets
ChIP K-562 GSE117944.KDM1A.K-562 405 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 445 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 378 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 328 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 431 bp overlap
ChIP K562 ENCFF128TYE 245 bp overlap
ChIP K562 ENCFF133OLU 206 bp overlap
ChIP K562 ENCFF934ZRG 479 bp overlap
KLF17 2 datasets
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 145 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 188 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 374 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 216 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 194 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 256 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 206 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFATC4 2 datasets
Motif DE_36h DE_36h-NFATC4_MA1525.3 9 bp overlap
Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 167 bp overlap
NFIA 1 dataset
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIL3 1 dataset
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
NFIX 1 dataset
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
NFYB 1 dataset
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
NR6A1 2 datasets
Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Nr2e1 2 datasets
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
PHOX2B 2 datasets
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 231 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 557 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 262 bp overlap
PRDM1 3 datasets
ChIP HEK293 ENCFF302TBP 209 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 193 bp overlap
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
Pparg::Rxra 2 datasets
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
RCOR1 2 datasets
ChIP K-562 ENCSR000EGC.RCOR1.K-562 184 bp overlap
ChIP K562 ENCFF216EEJ 297 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR138FUZ.RNF2.K-562 117 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 213 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 573 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 367 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 499 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 446 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 595 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 91 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
STAT1::STAT2 3 datasets
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Spi1 2 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 330 bp overlap
TAL1 14 datasets
ChIP CD34 GSE52924.TAL1.CD34 160 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 147 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 309 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 317 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 180 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 230 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 174 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 239 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 234 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 260 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 294 bp overlap
ChIP K562 ENCFF620GMX 227 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 181 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 623 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 212 bp overlap
ChIP K562 ENCFF931DJY 373 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 242 bp overlap
ChIP K562 ENCFF319QZT 374 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 120 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 174 bp overlap
ZBTB7C 2 datasets
Motif DE_36h DE_36h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB7C_MA0695.2 8 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 161 bp overlap
ZNF274 2 datasets
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
ZNF354C 2 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
ZNF524 2 datasets
Motif DE_36h DE_36h-ZNF524_MA2096.1 9 bp overlap
Motif DE_48h DE_48h-ZNF524_MA2096.1 9 bp overlap
ZNF684 2 datasets
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
ZNF816 1 dataset
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap