chr6 : 27,020,685 – 27,021,156
471 bp 88 TFs 2 linked genes
This 471 bp open chromatin element is linked to LINC00240 and LARRPM and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00240 361 bp At TSS Proximity
LARRPM 405 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:27,015,685 – 27,026,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 92 bp overlap
ChIP K562 ENCFF492SKF 410 bp overlap
AFF4 1 dataset
ChIP K562 ENCFF751HCS 169 bp overlap
AHR 1 dataset
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 86 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 208 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 72 bp overlap
BACH1 1 dataset
ChIP K562 ENCFF419VIM 244 bp overlap
BCOR 1 dataset
ChIP K562 ENCFF343XWA 73 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 285 bp overlap
BRD4 6 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 106 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 100 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 151 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 138 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 52 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 85 bp overlap
CC2D1A 1 dataset
ChIP K562 ENCFF567XUT 90 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 134 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 117 bp overlap
CHD4 2 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 238 bp overlap
ChIP K562 ENCFF933NKI 183 bp overlap
DDX20 2 datasets
ChIP K562 ENCFF205RDN 81 bp overlap
ChIP K562 ENCFF373BEC 162 bp overlap
EHMT2 1 dataset
ChIP A549 ENCFF026GWM 87 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 125 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 243 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCFF829RWA 128 bp overlap
ETS1 1 dataset
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 83 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 109 bp overlap
FOXA1 2 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 93 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 81 bp overlap
FOXA2 1 dataset
ChIP PANC-1 GSE119930.FOXA2.PANC-1 73 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 90 bp overlap
FOXM1 1 dataset
ChIP K562 ENCFF490XGT 122 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR290MUH.GABPA.K-562 194 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 242 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 261 bp overlap
ChIP DE DE-GATA4-2 451 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 82 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 457 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 198 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 85 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 181 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 249 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 57 bp overlap
HMGXB4 1 dataset
ChIP K562 ENCFF620JLK 55 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 98 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 267 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 56 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 86 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 226 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 120 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 67 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 151 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 94 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 100 bp overlap
ChIP K562 ENCFF750AXF 305 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 137 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 182 bp overlap
ChIP K562 ENCFF610CJH 120 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 174 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 103 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 51 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 108 bp overlap
PREB 1 dataset
ChIP K562 ENCFF378WFY 72 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 132 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 459 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 51 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 201 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 57 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 64 bp overlap
TBP 3 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 456 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 258 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 120 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 254 bp overlap
TFDP1 3 datasets
ChIP K562 ENCFF584VSB 125 bp overlap
ChIP K562 ENCFF794ZXJ 166 bp overlap
ChIP K562 ENCFF794ZXJ 367 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 232 bp overlap
ChIP K562 ENCFF429WPG 66 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 148 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 87 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 220 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 334 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 151 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 292 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 60 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 134 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCFF481TFV 102 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 51 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 146 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 106 bp overlap
ZNF431 1 dataset
ChIP K562 ENCFF431VZH 174 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF455WDH 177 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 100 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 72 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF505NFV 235 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 140 bp overlap
ZZZ3 1 dataset
ChIP K562 ENCFF845XAO 89 bp overlap