chr6 : 33,950,527 – 33,951,235
708 bp 82 TFs 3 linked genes
This 708 bp open chromatin element is linked to LEMD2, UQCC2, and HMGA1 and is bound by 82 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LEMD2 161.7 kb Distal Multiome
UQCC2 239.1 kb Distal Multiome
HMGA1 286.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:33,945,527 – 33,956,235
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 197 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 180 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 242 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 153 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 264 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 446 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 449 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 165 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 267 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 477 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 360 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 155 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 136 bp overlap
CREB1 6 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 231 bp overlap
ChIP MCF-7 ENCFF867SAS 296 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 230 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 158 bp overlap
CREBBP 2 datasets
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 13 datasets
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 183 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 258 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 330 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 236 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 199 bp overlap
ChIP endodermal cell ENCFF471YCZ 390 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 111 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 209 bp overlap
ChIP keratinocyte ENCFF667ULX 325 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 246 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 191 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 161 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 61 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 83 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 305 bp overlap
EZH2 2 datasets
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 445 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 184 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 411 bp overlap
ChIP DE DE-FOXA2-2 436 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 604 bp overlap
ChIP DE DE-GATA4-2 528 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 253 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 445 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 708 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 708 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 708 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 512 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 448 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 708 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 708 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 192 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 544 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 137 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 214 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 697 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 424 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 662 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 517 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 517 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 708 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 275 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
KDM1A 3 datasets
ChIP H1 ENCFF696SGD 368 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 708 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 135 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 106 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 708 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 537 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 680 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 674 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 197 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 166 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 234 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MYC 5 datasets
ChIP GP5D GSE51234.MYC.GP5D 301 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 225 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 420 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 178 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 411 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94782.MYCN.Kelly 142 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 198 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 647 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 516 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 227 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 414 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 708 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 346 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 648 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 205 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 99 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 651 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 203 bp overlap
RELA 2 datasets
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 232 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 184 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 368 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 208 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 675 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 671 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 708 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 678 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 638 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 708 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 594 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 430 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 403 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 285 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 547 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 648 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 292 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 491 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 265 bp overlap
STAT1 1 dataset
Motif DE_24h DE_24h-STAT1_MA0137.4 9 bp overlap
STAT3 16 datasets
Motif DE_24h DE_24h-STAT3_MA0144.3 9 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 167 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 119 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 295 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 350 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 452 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 407 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 176 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 141 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 251 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 288 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 270 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 306 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 330 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 310 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 300 bp overlap
Stat4 1 dataset
Motif DE_24h DE_24h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 217 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 214 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 478 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1575.2 17 bp overlap
TP63 5 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 179 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 148 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 229 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 192 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 156 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 180 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 145 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 178 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 283 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 311 bp overlap
ZKSCAN1 3 datasets
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 203 bp overlap
ChIP K562 ENCFF977CBA 89 bp overlap
ChIP MCF-7 ENCSR449UFF.ZKSCAN1.MCF-7 152 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 176 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 237 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 126 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 255 bp overlap