chr6 : 38,433,142 – 38,434,636
1,494 bp 76 TFs 2 linked genes
This 1.5 kb open chromatin element is linked to BTBD9 and GLO1 and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BTBD9 205.6 kb Distal Multiome
GLO1 268.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:38,428,142 – 38,439,636
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
BACH1 2 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
BCL6B 1 dataset
Motif DE_24h DE_24h-BCL6B_MA0731.1 17 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 63 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 162 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 388 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 120 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif DE_24h DE_24h-ESRRA_MA0592.4 9 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Esrrg 2 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
FOSL1::JUN 2 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 2 datasets
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUNB_MA1137.2 9 bp overlap
FOXA1 1 dataset
Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 286 bp overlap
ChIP DE DE-FOXA2-1 1008 bp overlap
ChIP DE DE-FOXA2-2 1015 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 327 bp overlap
ChIP DE DE-GATA4-1 650 bp overlap
ChIP DE DE-GATA4-2 439 bp overlap
ChIP DE DE-GATA4-2 829 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-1 452 bp overlap
ChIP DE DE-GATA6-2 565 bp overlap
ChIP DE DE-GATA6-2 618 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 689 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 581 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 506 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 585 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 929 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 333 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 639 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
Hnf1A 4 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 11 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 396 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 528 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 395 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 382 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 611 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 639 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 687 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 295 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 403 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 489 bp overlap
LIN54 1 dataset
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
Mecom 1 dataset
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 6 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 301 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 985 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 239 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 575 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 217 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 644 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F2 2 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif DE_24h DE_24h-NR2F2_MA1111.2 7 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 3 datasets
Motif DE_24h DE_24h-ONECUT1_MA0679.3 9 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 307 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 1225 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 226 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 565 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 238 bp overlap
Ppara 2 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif DE_24h DE_24h-Ppara_MA2338.1 7 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
Prdm15 1 dataset
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
RORB 1 dataset
Motif DE_24h DE_24h-RORB_MA1150.2 10 bp overlap
SIX1 1 dataset
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 434 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 267 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 980 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 1447 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1458 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1484 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 478 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 768 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 373 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 882 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 909 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 399 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
TCF7L1 4 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
ZSCAN16 2 datasets
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap