chr6 : 38,477,364 – 38,478,181
817 bp 82 TFs 2 linked genes
This 817 bp open chromatin element is linked to BTBD9 and GLO1 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BTBD9 162.1 kb Distal Multiome
GLO1 225.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:38,472,364 – 38,483,181
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 597 bp overlap
ChIP H1 ENCFF399KAM 395 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 473 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 438 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 370 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 289 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 331 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 445 bp overlap
BRD4 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 248 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 323 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 224 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 97 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 138 bp overlap
CHD7 3 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 196 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 213 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 474 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 335 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 345 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 161 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP H1 ENCFF451BLH 194 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 751 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 219 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 148 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 201 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 159 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 115 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 159 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 167 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 327 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 179 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 134 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 558 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 366 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 169 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 88 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 157 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 341 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 270 bp overlap
ChIP DE DE-FOXA2-1 817 bp overlap
ChIP DE DE-FOXA2-2 817 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 198 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 146 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 111 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 177 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 126 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 817 bp overlap
ChIP DE DE-GATA4-2 817 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 505 bp overlap
ChIP foregut GSE117136.GATA4.foregut 554 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 589 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 304 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 423 bp overlap
ChIP AGS GSE51936.GATA6.AGS 146 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 178 bp overlap
ChIP DE DE-GATA6-1 817 bp overlap
ChIP DE DE-GATA6-2 817 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 817 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 817 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 817 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 817 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 817 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 817 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 817 bp overlap
ChIP foregut GSE117136.GATA6.foregut 500 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 254 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 541 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 417 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 195 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 210 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 161 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 109 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 162 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 561 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 470 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 607 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 698 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 534 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 570 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 686 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 686 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 620 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 233 bp overlap
ChIP H1 ENCFF468JZD 170 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 210 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 142 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 164 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 172 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 323 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 148 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 192 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 176 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 168 bp overlap
LYL1 1 dataset
ChIP THP-1 GSE63484.LYL1.THP-1 148 bp overlap
MAX 5 datasets
ChIP H1 ENCFF601FOM 264 bp overlap
ChIP H1 ENCFF914VQY 277 bp overlap
ChIP NB4 ENCFF966MWB 194 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 185 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 339 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 120 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 196 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF701PYP 347 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 464 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 345 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 339 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 131 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 213 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 199 bp overlap
NANOG 9 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 600 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 499 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 184 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 641 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 592 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 597 bp overlap
ChIP hESC GSE18292.NANOG.hESC 264 bp overlap
ChIP hESC GSE18292.NANOG.hESC 187 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 234 bp overlap
ONECUT2 1 dataset
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 79 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 563 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 121 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 289 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 319 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 189 bp overlap
RUNX1 8 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 220 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 187 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 156 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 156 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 239 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 169 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 128 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 176 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 145 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF896IJG 212 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 100 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 817 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 663 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 788 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 750 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 148 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 261 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 142 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 168 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 528 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 464 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 672 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 482 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 255 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 780 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 357 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 553 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 801 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 184 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 284 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 359 bp overlap
SPI1 2 datasets
ChIP KG-1 GSE128834.SPI1.KG-1 133 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 166 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 164 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 816 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 201 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 217 bp overlap
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 199 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 161 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 375 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 489 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 239 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 247 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 316 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 383 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 211 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 211 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 277 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 225 bp overlap