chr6 : 39,073,107 – 39,073,666
559 bp 17 TFs 2 linked genes
This 559 bp open chromatin element is linked to SAYSD1 and KCNK5 and is bound by 17 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SAYSD1 41.7 kb Distal Multiome
KCNK5 156.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:39,068,107 – 39,078,666
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
CTCF 4 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 65 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 256 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 125 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 217 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 132 bp overlap
EZH2 3 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 394 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 203 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 91 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 486 bp overlap
ChIP DE DE-GATA4-2 480 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 486 bp overlap
ChIP DE DE-GATA6-2 496 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 259 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 355 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 73 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 91 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 160 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 419 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 123 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 115 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 202 bp overlap