chr6 : 39,117,239 – 39,117,843
604 bp 28 TFs 2 linked genes
This 604 bp open chromatin element is linked to SAYSD1 and KCNK5 and is bound by 28 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SAYSD1 2.1 kb Proximal Proximity
KCNK5 112.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:39,112,239 – 39,122,843
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 292 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 309 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 369 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 237 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 290 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 449 bp overlap
ChIP DE DE-FOXA2-2 425 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 341 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 531 bp overlap
ChIP DE DE-GATA4-2 549 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 568 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 451 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 451 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 526 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 165 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 201 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 174 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 292 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 253 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 211 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 374 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 227 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 266 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 229 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 231 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 329 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 335 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 162 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 604 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 604 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 301 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 245 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 313 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 588 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 525 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 328 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 436 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 446 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 159 bp overlap