chr6 : 47,181,788 – 47,182,605
817 bp 96 TFs 2 linked genes
This 817 bp open chromatin element is linked to TNFRSF21 and CD2AP and is bound by 96 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TNFRSF21 127.7 kb Distal Multiome
CD2AP 295.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:47,176,788 – 47,187,605
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE80256.AR.LNCaP 234 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 143 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 101 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 113 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 77 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 122 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 233 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 234 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 264 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 170 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE44236.ARNTL.U2OS 197 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 275 bp overlap
ASH2L 1 dataset
ChIP VCaP GSE60841.ASH2L.VCaP 92 bp overlap
Atf3 1 dataset
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 180 bp overlap
BNC2 1 dataset
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 178 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 210 bp overlap
BRD4 16 datasets
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 288 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 293 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 274 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 357 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 218 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 101 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 179 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 271 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 160 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 183 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 365 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 373 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 181 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 140 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 75 bp overlap
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 107 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 272 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 81 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 324 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 371 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 62 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 103 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 299 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 84 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 72 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 216 bp overlap
ChIP BLaER1 ENCFF896HSY 237 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 65 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 290 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 299 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 323 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 229 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 409 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 342 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 372 bp overlap
ESR1 15 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 218 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 74 bp overlap
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 255 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 124 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 153 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 106 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 107 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 147 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 98 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 189 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 133 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 81 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 59 bp overlap
ChIP MCF-7_vehicle_4h GSE99626.ESR1.MCF-7_vehicle_4h 62 bp overlap
ChIP breast_tumor_Male_9 GSE104399.ESR1.breast_tumor_Male_9 170 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 82 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 56 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 77 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 78 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 107 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 61 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 52 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 95 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 85 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 76 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 73 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 214 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 173 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 644 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 143 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 144 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 105 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 51 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 97 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 61 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 141 bp overlap
ChIP DE DE-FOXA2-1 768 bp overlap
ChIP DE DE-FOXA2-2 795 bp overlap
FOXB1 2 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
GATA1 5 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 200 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 157 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 157 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 817 bp overlap
ChIP DE DE-GATA4-2 817 bp overlap
ChIP foregut GSE117136.GATA4.foregut 485 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 675 bp overlap
ChIP DE DE-GATA6-2 817 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 271 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 779 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 354 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 654 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 183 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 145 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 702 bp overlap
ChIP foregut GSE117136.GATA6.foregut 439 bp overlap
GLI3 2 datasets
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
GRHL2 2 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 137 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 175 bp overlap
Gli1 2 datasets
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_48h DE_48h-Gli2_MA0734.4 9 bp overlap
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
HDAC1 4 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 55 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 102 bp overlap
ChIP PC-3 GSE147455.HDAC1.PC-3 238 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 176 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 148 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 389 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 217 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 199 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 82 bp overlap
HOXB13 5 datasets
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 196 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 86 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 53 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 88 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 169 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 256 bp overlap
JUN 2 datasets
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 109 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 88 bp overlap
Jun 1 dataset
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 546 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 341 bp overlap
LHX6 2 datasets
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 141 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 80 bp overlap
MED1 3 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 227 bp overlap
ChIP VCaP GSE148358.MED1.VCaP 244 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 357 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS3 2 datasets
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 56 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 240 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 210 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 199 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 274 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 467 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 159 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 163 bp overlap
NRL 2 datasets
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 81 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 53 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 108 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 468 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 456 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 223 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 51 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 320 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 186 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 247 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 164 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 202 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 206 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 110 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 113 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 191 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 378 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 571 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
STAT3 6 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 161 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 149 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 197 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 146 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 211 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 320 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TEAD4 3 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 88 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 70 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 193 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 156 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 101 bp overlap
YY1AP1 5 datasets
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 59 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 275 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 174 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 201 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 138 bp overlap
Yy1 2 datasets
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZNF217 2 datasets
ChIP MCF-7 ENCFF299BWK 97 bp overlap
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 174 bp overlap