chr6 : 49,787,218 – 49,787,642
424 bp 87 TFs 2 linked genes
This 424 bp open chromatin element is linked to PGK2 and ENSG00000235122 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PGK2 at TSS At TSS Proximity
ENSG00000235122 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:49,782,218 – 49,792,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
CC2D1A 1 dataset
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 270 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 309 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 154 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 191 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 327 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 223 bp overlap
CTCF 6 datasets
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 181 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 286 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 156 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 136 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 179 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 281 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 424 bp overlap
DDX20 2 datasets
ChIP K-562 ENCSR446LAV.DDX20.K-562 332 bp overlap
ChIP K562 ENCFF205RDN 365 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 150 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 235 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELF4 2 datasets
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
Motif ES_0h ES_0h-ELF4_MA0641.1 12 bp overlap
ELK1::HOXB13 2 datasets
Motif DE_12h DE_12h-ELK1HOXB13_MA1932.2 15 bp overlap
Motif ES_0h ES_0h-ELK1HOXB13_MA1932.2 15 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 154 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOS 3 datasets
ChIP K-562 ENCSR000FAI.FOS.K-562 135 bp overlap
ChIP K562 ENCFF951GBI 265 bp overlap
ChIP MCF-7 ENCFF282FWZ 70 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 249 bp overlap
GABPA 3 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
ChIP K-562 ENCSR000BLO.GABPA.K-562 175 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 296 bp overlap
ChIP K562 ENCFF015GDS 424 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 218 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 133 bp overlap
HOXD12::ELK1 2 datasets
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif ES_0h ES_0h-HOXD12ELK1_MA1958.2 13 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IRF3 2 datasets
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
IRF7 2 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 164 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 2 datasets
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MEIS3 2 datasets
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MYBL2 1 dataset
ChIP K-562 ENCSR162IEM.MYBL2.K-562 216 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFYA 7 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
ChIP HeLa-S3 ENCFF016YWF 298 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 279 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 252 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 319 bp overlap
ChIP K562 ENCFF732HOX 369 bp overlap
NFYB 8 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 268 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 256 bp overlap
ChIP HepG2 ENCFF174VYX 297 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 280 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 160 bp overlap
ChIP WTC11 ENCFF751ZTQ 332 bp overlap
NFYC 4 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 273 bp overlap
ChIP HepG2 ENCFF836FYP 142 bp overlap
NR1D1 2 datasets
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 232 bp overlap
PBX1 2 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 290 bp overlap
ChIP A549 ENCFF475JCE 351 bp overlap
PBX2 6 datasets
ChIP Hep-G2 ENCSR849DFF.PBX2.Hep-G2 165 bp overlap
ChIP HepG2 ENCFF225AJT 337 bp overlap
ChIP K-562 ENCSR263DFP.PBX2.K-562 341 bp overlap
ChIP K-562 ENCSR633EIC.PBX2.K-562 125 bp overlap
ChIP K562 ENCFF286KMN 145 bp overlap
ChIP K562 ENCFF385PDC 241 bp overlap
PBX3 5 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 182 bp overlap
ChIP SK-N-SH ENCFF876BMC 155 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 298 bp overlap
PKNOX1 10 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCFF589FCY 324 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 374 bp overlap
ChIP HEK293T ENCFF174WDB 330 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 352 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 424 bp overlap
ChIP K562 ENCFF236IUS 424 bp overlap
ChIP MCF-7 ENCFF116OCS 312 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 369 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 205 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RBM25 2 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 284 bp overlap
ChIP K562 ENCFF248CGR 344 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RFX1 8 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 409 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 395 bp overlap
ChIP K562 ENCFF421AVO 378 bp overlap
ChIP K562 ENCFF809XVG 291 bp overlap
ChIP MCF-7 ENCFF782EZS 302 bp overlap
ChIP MCF-7 ENCFF973QAD 367 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 415 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 263 bp overlap
RFX5 6 datasets
ChIP H1 ENCFF605EGG 369 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 126 bp overlap
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 268 bp overlap
ChIP MCF-7 ENCFF983ILY 114 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 355 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 250 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 339 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SP1 4 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 302 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 209 bp overlap
SP2 9 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
ChIP H1 ENCFF903ACN 327 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 229 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 294 bp overlap
ChIP HepG2 ENCFF667RFH 390 bp overlap
ChIP K-562 ENCSR000BNL.SP2.K-562 274 bp overlap
ChIP K562 ENCFF891GNQ 237 bp overlap
ChIP WA01 ENCSR000BQG.SP2.WA01 249 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFDP1 2 datasets
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
Motif ES_0h ES_0h-TFDP1_MA1122.2 8 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 378 bp overlap
ChIP K562 ENCFF875HLX 371 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 313 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 167 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 120 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 180 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
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