chr6 : 53,060,233 – 53,060,576
343 bp 31 TFs 3 linked genes
This 343 bp open chromatin element is linked to CILK1, FBXO9, and ENSG00000288646 and is bound by 31 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CILK1 1.2 kb Proximal Proximity
FBXO9 4.9 kb Proximal Proximity
ENSG00000288646 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:53,055,233 – 53,065,576
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 174 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 262 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 172 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 177 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 332 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 99 bp overlap
FOXA1 2 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 75 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 161 bp overlap
GATA2 1 dataset
ChIP endothelial cell of umbilical vein ENCFF148NLK 233 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 59 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 226 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 272 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 239 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 218 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 99 bp overlap
HOXB13 1 dataset
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 148 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 120 bp overlap
KMT2A 1 dataset
ChIP SEM GSE83671.KMT2A.SEM 217 bp overlap
MBD4 1 dataset
ChIP HepG2 ENCFF785HSD 343 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 343 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 343 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 207 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 81 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 209 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 162 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 52 bp overlap
ChIP K562 ENCFF248CGR 99 bp overlap
ChIP K562 ENCFF957ORK 99 bp overlap
RNF219 1 dataset
ChIP HepG2 ENCFF710YJO 343 bp overlap
RUNX1 2 datasets
ChIP NALM-6 GSE126300.RUNX1.NALM-6 213 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 243 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 237 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 240 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 249 bp overlap
TRIM25 2 datasets
ChIP K562 ENCFF376TLP 343 bp overlap
ChIP K562 ENCFF786UTW 338 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 211 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 230 bp overlap
ZSCAN22 2 datasets
ChIP HEK293 GSE76494.ZSCAN22.HEK293 259 bp overlap
ChIP HepG2 ENCFF246MVE 343 bp overlap