chr1 : 113,999,654 – 114,000,118
464 bp 40 TFs 3 linked genes
This 464 bp open chromatin element is linked to HIPK1, RSBN1, and PHTF1 and is bound by 40 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HIPK1 70.2 kb Distal Multiome
RSBN1 187.6 kb Distal Multiome
PHTF1 240.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:113,994,654 – 114,005,118
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 273 bp overlap
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 123 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 226 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 122 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 126 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 191 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 187 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 159 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 289 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 278 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 148 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 173 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 223 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 239 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 271 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 464 bp overlap
ChIP DE DE-FOXA2-2 464 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 270 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 426 bp overlap
ChIP DE DE-GATA4-2 422 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 209 bp overlap
ChIP foregut GSE117136.GATA4.foregut 371 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 384 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 369 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 463 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 399 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 400 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 454 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap
ChIP foregut GSE117136.GATA6.foregut 366 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 387 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 284 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 226 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 326 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 241 bp overlap
KDM1A 3 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 283 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 311 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 408 bp overlap
KLF9 1 dataset
ChIP MCF-7 ENCFF618FCM 302 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 231 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 267 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 357 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 298 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 195 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 119 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 190 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 399 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 282 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 206 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 246 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 220 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 197 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 411 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 389 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 332 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 382 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 322 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 355 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 263 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 179 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 291 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 249 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 353 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 88 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 175 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 245 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 317 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 288 bp overlap