chr1 : 114,287,494 – 114,287,999
505 bp 32 TFs 2 linked genes
This 505 bp open chromatin element is linked to TRIM33 and BCAS2 and is bound by 32 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRIM33 223.5 kb Distal Multiome
BCAS2 293.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:114,282,494 – 114,292,999
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
Bcl11B 1 dataset
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 149 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 217 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 219 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 304 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dmrt1 1 dataset
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 434 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 146 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 237 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 229 bp overlap
ChIP DE DE-FOXA2-1 505 bp overlap
ChIP DE DE-FOXA2-2 505 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 505 bp overlap
ChIP DE DE-GATA4-2 505 bp overlap
ChIP foregut GSE117136.GATA4.foregut 464 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 505 bp overlap
ChIP DE DE-GATA6-2 505 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 505 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 457 bp overlap
ChIP foregut GSE117136.GATA6.foregut 422 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
GLI3 2 datasets
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 183 bp overlap
LHX6 1 dataset
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 435 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 345 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 268 bp overlap
PBX1 1 dataset
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 210 bp overlap
RUNX3 1 dataset
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 505 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 479 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 324 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 403 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 486 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 351 bp overlap
ZNF143 1 dataset
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 120 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 165 bp overlap