chr1:150,641,008–150,641,820

chr1 : 150,641,008 – 150,641,820

812 bp 66 TFs 9 linked genes

This 812 bp open chromatin element is linked to 9 target genes and is bound by 66 transcription factors.

Linked Genes

9 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000288880		11.8 kb	Distal	Multiome
ENSA		12.0 kb	Distal	Multiome
GOLPH3L		55.6 kb	Distal	Multiome
MCL1		62.0 kb	Distal	Multiome
TARS2		154.2 kb	Distal	Multiome
CTSK		166.7 kb	Distal	Multiome+HiCAR
ARNT		235.0 kb	Distal	Multiome
RPRD2		277.4 kb	Distal	Multiome
SETDB1		284.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

ARID1B 2 datasets

ChIP K562 ENCFF938UXQ 327 bp overlap

ChIP K562 ENCFF938UXQ 242 bp overlap

BCL6B 1 dataset

Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap

CBFA2T3 1 dataset

ChIP K562 ENCFF673OEZ 199 bp overlap

CDK9-HEXIM1 1 dataset

ChIP A-375 GSE68047.CDK9-HEXIM1.A-375 151 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 58 bp overlap

CHD1 2 datasets

ChIP WA01 ENCSR000AQK.CHD1.WA01 259 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 57 bp overlap

CTCF 3 datasets

Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap

Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap

Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap

CXXC5 1 dataset

ChIP K562 ENCFF497CZN 397 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF093OYK 398 bp overlap

ChIP BLaER1 ENCFF460KDD 251 bp overlap

ChIP K562 ENCFF775HUO 313 bp overlap

ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 58 bp overlap

EP300 1 dataset

ChIP H1 ENCFF927IYK 297 bp overlap

ERF::FOXI1 3 datasets

Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap

Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap

Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap

ChIP WTC11 ENCFF011YUL 281 bp overlap

ETV2::FOXI1 3 datasets

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap

Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap

Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap

FLI1::FOXI1 3 datasets

Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap

Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap

Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 488 bp overlap

ChIP DE DE-FOXA2-2 421 bp overlap

GATA1 2 datasets

ChIP erythroblast ENCFF867JAR 444 bp overlap

ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 286 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 493 bp overlap

ChIP DE DE-GATA4-2 562 bp overlap

Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 507 bp overlap

ChIP DE DE-GATA6-2 581 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 490 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 489 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 544 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 524 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 497 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 492 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 499 bp overlap

GATAD2A 1 dataset

ChIP K562 ENCFF071LJW 345 bp overlap

HDAC2 1 dataset

ChIP K562 ENCFF744ALD 411 bp overlap

HOXB13 1 dataset

Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap

Hoxa13 1 dataset

Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap

IKZF1 2 datasets

ChIP K562 ENCFF348IBL 505 bp overlap

ChIP K562 ENCFF771OHZ 151 bp overlap

IKZF2 1 dataset

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 475 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 544 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 523 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 288 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 327 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 490 bp overlap

KDM1A 1 dataset

ChIP K562 ENCFF133OLU 461 bp overlap

KLF13 1 dataset

Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap

Motif DE_72h DE_72h-KLF3_MA1516.2 10 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 693 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 402 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 503 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 174 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 410 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 176 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 379 bp overlap

NR2F1 7 datasets

Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap

Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap

Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap

Motif DE_48h DE_48h-NR2F1_MA1537.2 13 bp overlap

Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap

Motif DE_72h DE_72h-NR2F1_MA1537.2 13 bp overlap

ChIP K562 ENCFF221HJH 497 bp overlap

NR2F6 3 datasets

ChIP K-562 ENCSR707QWA.NR2F6.K-562 149 bp overlap

ChIP K562 ENCFF674RQA 457 bp overlap

ChIP K562 ENCFF674RQA 416 bp overlap

Nfat5 1 dataset

Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap

Nfatc2 1 dataset

Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 404 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 515 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 278 bp overlap

RNF2 2 datasets

ChIP K562 ENCFF653BQJ 476 bp overlap

ChIP K562 ENCFF653BQJ 269 bp overlap

RXRA::VDR 3 datasets

Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap

Motif DE_48h DE_48h-RXRAVDR_MA0074.1 15 bp overlap

Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap

Rarb 3 datasets

Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap

Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap

Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 546 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 269 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 488 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 744 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 365 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 502 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 495 bp overlap

SMAD4 1 dataset

ChIP K562 ENCFF628RBP 541 bp overlap

SMARCA4 2 datasets

ChIP K562 ENCFF316MCJ 485 bp overlap

ChIP K562 ENCFF506JCB 159 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 221 bp overlap

SMARCE1 1 dataset

ChIP K562 ENCFF690CFF 149 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 390 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 529 bp overlap

ChIP K562 ENCFF059YCJ 437 bp overlap

Motif DE_72h DE_72h-TBP_MA0108.3 7 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 139 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 136 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TEAD4 1 dataset

ChIP ESC S26-ESC-d0-TEAD4-exp1 272 bp overlap

THRB 3 datasets

Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap

Motif DE_48h DE_48h-THRB_MA1574.2 13 bp overlap

Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap

TOE1 2 datasets

ChIP K562 ENCFF728FRA 551 bp overlap

ChIP K562 ENCFF728FRA 452 bp overlap

ChIP K-562 ENCSR000BMH.YY1.K-562 147 bp overlap

ChIP K562 ENCFF660QRE 164 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 130 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap

ZBTB7A 1 dataset

ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 144 bp overlap

ZNF16 1 dataset

Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 87 bp overlap

ZNF341 1 dataset

Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap

ZNF362 2 datasets

ChIP HEK293 ENCFF436CGE 250 bp overlap

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 76 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 269 bp overlap

ZNF592 1 dataset

ChIP K-562 ENCSR249BHQ.ZNF592.K-562 223 bp overlap

ZNF770 3 datasets

ChIP HEK293 ENCFF468FCG 385 bp overlap

ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 262 bp overlap

ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap