chr7 : 21,642,273 – 21,643,074
801 bp 97 TFs 2 linked genes
This 801 bp open chromatin element is linked to DNAH11 and SP4 and is bound by 97 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DNAH11 99.6 kb Distal Multiome
SP4 214.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:21,637,273 – 21,648,074
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 473 bp overlap
ChIP 12Z GSE129781.ARID1A.12Z 191 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 273 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 183 bp overlap
BRD4 1 dataset
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 231 bp overlap
CDX4 2 datasets
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CEBPB 1 dataset
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 110 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 586 bp overlap
CTCF 4 datasets
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap
Motif DE_48h DE_48h-CTCF_MA1930.2 33 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 463 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 417 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 363 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 159 bp overlap
ESR1 9 datasets
Motif DE_36h DE_36h-ESR1_MA0112.4 15 bp overlap
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 253 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 263 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 234 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 384 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 206 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 287 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 152 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 358 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 318 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 594 bp overlap
ChIP DE DE-FOXA2-2 666 bp overlap
Foxn1 2 datasets
Motif DE_36h DE_36h-Foxn1_MA1684.1 6 bp overlap
Motif DE_60h DE_60h-Foxn1_MA1684.1 6 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 721 bp overlap
ChIP DE DE-GATA4-2 768 bp overlap
ChIP foregut GSE117136.GATA4.foregut 661 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 639 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 553 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 712 bp overlap
ChIP DE DE-GATA6-2 729 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 698 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 705 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 651 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 801 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 758 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 744 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 698 bp overlap
ChIP foregut GSE117136.GATA6.foregut 648 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 517 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 530 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 588 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 468 bp overlap
GLI3 1 dataset
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 216 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 315 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 277 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Gli1 1 dataset
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
HOXB13 2 datasets
Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 2 datasets
Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 367 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 425 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 380 bp overlap
JUNB 2 datasets
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 3 datasets
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
ChIP K562 ENCFF336RCR 461 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 180 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 180 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 372 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
ChIP HEK293 ENCFF821TIY 385 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 248 bp overlap
ChIP K562 ENCFF320GSD 381 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 417 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFE2 5 datasets
Motif DE_36h DE_36h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
ChIP K-562 ENCSR552YGL.NFE2.K-562 221 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 182 bp overlap
ChIP K562 ENCFF047YKA 405 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 127 bp overlap
Nfat5 2 datasets
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 384 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 309 bp overlap
ChIP K562 ENCFF286KMN 417 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 452 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 239 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 473 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 385 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 529 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 157 bp overlap
RARA 3 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 260 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 602 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 769 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 138 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_48h DE_48h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
Motif DE_48h DE_48h-RFX2_MA0600.3 14 bp overlap
RFX5 2 datasets
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Motif DE_48h DE_48h-RFX5_MA0510.3 14 bp overlap
RORA 2 datasets
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap
Rfx6 2 datasets
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 198 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 146 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 662 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 659 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 551 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 566 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 626 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 383 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 761 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 801 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 424 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 408 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 557 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 304 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 769 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 801 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 709 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 524 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 443 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 536 bp overlap
SOX18 2 datasets
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX2 9 datasets
ChIP HNSC GSE69479.SOX2.HNSC 764 bp overlap
ChIP NPC GSE122631.SOX2.NPC 218 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 451 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 117 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 321 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 374 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 429 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 393 bp overlap
SOX21 2 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 251 bp overlap
SOX8 2 datasets
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 162 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 190 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SRF 6 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP Ishikawa ENCFF992QXM 305 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 318 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 145 bp overlap
ChIP K562 ENCFF766EOO 397 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 216 bp overlap
Sox1 2 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox5 2 datasets
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 2 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 114 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 338 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 471 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 259 bp overlap
TEAD1 2 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 274 bp overlap
TEAD2 1 dataset
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_48h DE_48h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 272 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 437 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 465 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 318 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 162 bp overlap
ZNF157 2 datasets
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF16 2 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 235 bp overlap