chr1 : 156,073,800 – 156,074,094
294 bp 76 TFs 2 linked genes
This 294 bp open chromatin element is linked to MEX3A and LMNA and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MEX3A 7.6 kb Proximal Proximity
LMNA 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:156,068,800 – 156,079,094
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 2 datasets
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 221 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 202 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 232 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 244 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 234 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 155 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 93 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 227 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 196 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 213 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 286 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 294 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 294 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 294 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 294 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 226 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 294 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 216 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 266 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 215 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 294 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 286 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 186 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 139 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 294 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 192 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 227 bp overlap
FOXA1 1 dataset
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 137 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 259 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 177 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 294 bp overlap
HDAC2 3 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 199 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 168 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 157 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 178 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 244 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 294 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 170 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 294 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 163 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 129 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 233 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 161 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 294 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 294 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 219 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 294 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 247 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 132 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 175 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 159 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 154 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 251 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 280 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 236 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 234 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 245 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 294 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 294 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 294 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 294 bp overlap
RAD21 1 dataset
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 277 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 294 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 202 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 157 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 173 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 162 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 217 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 139 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 232 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 147 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 238 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 294 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 284 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 288 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 283 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 294 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 265 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 97 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 293 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 294 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 70 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 212 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 277 bp overlap
ChIP hESC GSE69479.SOX2.hESC 217 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 224 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 152 bp overlap
SP1 5 datasets
ChIP H1 ENCFF263FUH 293 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 185 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 98 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 294 bp overlap
ChIP WTC11 ENCFF688PEU 294 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 157 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 193 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 201 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 294 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 242 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 259 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 180 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 234 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 157 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 268 bp overlap
ZNF263 1 dataset
ChIP HEK293T GSE78099.ZNF263.HEK293T 232 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 147 bp overlap
ChIP WTC11 ENCFF551GAV 294 bp overlap
ZNF398 3 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 206 bp overlap
ChIP H9 GSE133630.ZNF398.H9 203 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 242 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 276 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 158 bp overlap
ChIP K562 ENCFF601EMZ 294 bp overlap
ChIP K562 ENCFF601EMZ 294 bp overlap
ZNF671 1 dataset
ChIP HEK293T GSE78099.ZNF671.HEK293T 201 bp overlap