chr7 : 139,838,738 – 139,839,616
878 bp 42 TFs 2 linked genes
This 878 bp open chromatin element is linked to TBXAS1 and HIPK2 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TBXAS1 60.9 kb Distal Multiome
HIPK2 61.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:139,833,738 – 139,844,616
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARID4B 2 datasets
ChIP K562 ENCFF791HBV 349 bp overlap
ChIP K562 ENCFF791HBV 566 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 123 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 159 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 367 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 146 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 573 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 464 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 389 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 582 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 446 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 342 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 641 bp overlap
ChIP DE DE-FOXA2-2 627 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 822 bp overlap
ChIP DE DE-GATA4-2 854 bp overlap
ChIP foregut GSE117136.GATA4.foregut 436 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 821 bp overlap
ChIP DE DE-GATA6-2 878 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 587 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 546 bp overlap
ChIP foregut GSE117136.GATA6.foregut 412 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
Lhx3 1 dataset
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 473 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 492 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 380 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 208 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 157 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 237 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 264 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 371 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 243 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 489 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 849 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 554 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 325 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 174 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 183 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 406 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 427 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 224 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 177 bp overlap
ZNF263 1 dataset
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap