chr7 : 140,635,398 – 140,636,063
665 bp 49 TFs 2 linked genes
This 665 bp open chromatin element is linked to DENND2A and ENSG00000285904 and is bound by 49 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DENND2A 4.7 kb Proximal Proximity
ENSG00000285904 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:140,630,398 – 140,641,063
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 494 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 168 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 307 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 299 bp overlap
CBX2 2 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 373 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 129 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 417 bp overlap
CDK8 1 dataset
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 117 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 127 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 199 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 314 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 61 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 88 bp overlap
FOXM1 1 dataset
ChIP HeLa GSE52098.FOXM1.HeLa 370 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 201 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 135 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 170 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 135 bp overlap
GATA2 9 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 161 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 161 bp overlap
ChIP SH-SY5Y ENCFF485YIB 146 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 228 bp overlap
ChIP SK-N-SH ENCFF764OZD 268 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 203 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 177 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 203 bp overlap
GATA3 4 datasets
ChIP Kelly GSE65664.GATA3.Kelly 163 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 99 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 179 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 192 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 254 bp overlap
ChIP DE DE-GATA4-2 346 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 76 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 76 bp overlap
ChIP foregut GSE117136.GATA4.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 352 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 221 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 266 bp overlap
ChIP DE DE-GATA6-2 218 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 161 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 546 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 288 bp overlap
ChIP foregut GSE117136.GATA6.foregut 254 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 227 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 253 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 195 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 226 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HNRNPLL 4 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 196 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 197 bp overlap
ChIP K562 ENCFF541ZGX 354 bp overlap
ChIP K562 ENCFF598PWW 354 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 325 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 425 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 333 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 385 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 459 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 559 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 210 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 408 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 197 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 127 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 232 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 115 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF427MRU 370 bp overlap
ChIP liver ENCFF565JGD 383 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 588 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 451 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 233 bp overlap
POLR2A 2 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 121 bp overlap
ChIP spleen ENCFF446ZGT 268 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 141 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 182 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 353 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 611 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 392 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 407 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 162 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 375 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 130 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR138FUZ.RNF2.K-562 50 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 385 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 280 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 273 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 205 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 261 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 247 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 178 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 213 bp overlap
SNRNP70 1 dataset
ChIP K-562 ENCSR754ZHU.SNRNP70.K-562 255 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 243 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 266 bp overlap
SREBF1 1 dataset
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 346 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 221 bp overlap
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