chr1 : 162,464,538 – 162,465,124
586 bp 39 TFs 2 linked genes
This 586 bp open chromatin element is linked to UHMK1 and UAP1 and is bound by 39 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
UHMK1 33.0 kb Distal Multiome
UAP1 97.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:162,459,538 – 162,470,124
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.AR.22Rv1_shKDM3A 311 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE120715.BRD2.K-562_DMSO 142 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 297 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 55 bp overlap
Dmrt1 1 dataset
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 380 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-2 569 bp overlap
GATA2 1 dataset
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 586 bp overlap
ChIP DE DE-GATA4-2 586 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 265 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 586 bp overlap
ChIP DE DE-GATA6-2 586 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 526 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 420 bp overlap
ChIP foregut GSE117136.GATA6.foregut 279 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NKX6-3 1 dataset
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 131 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 50 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 414 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 586 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 545 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 586 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 398 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 388 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 427 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 565 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 124 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 1 dataset
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 350 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 233 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 152 bp overlap
ChIP K562 ENCFF281INV 72 bp overlap
ZNF324 1 dataset
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap