chr1 : 163,312,429 – 163,312,953
524 bp 17 TFs 3 linked genes
This 524 bp open chromatin element is linked to RGS5, ENSG00000232995, and NUF2 and is bound by 17 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RGS5 8.8 kb Proximal Proximity
ENSG00000232995 8.8 kb Proximal Proximity
NUF2 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:163,307,429 – 163,317,953
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 213 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 167 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 503 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 151 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 524 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 159 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 159 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 120 bp overlap
GATA3 2 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 166 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 456 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 524 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 524 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 291 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 440 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 403 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 210 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 487 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 471 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 351 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 236 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 471 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 467 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 161 bp overlap