chr1 : 170,667,162 – 170,667,706
544 bp 75 TFs 2 linked genes
This 544 bp open chromatin element is linked to ENSG00000271811 and PRRX1 and is bound by 75 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000271811 at TSS At TSS Proximity
PRRX1 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,662,162 – 170,672,706
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 164 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 245 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 100 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 510 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 145 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 143 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 245 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 237 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 256 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 215 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 218 bp overlap
BRD4 4 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 318 bp overlap
ChIP MCF-7 GSE55921.BRD4.MCF-7 63 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 162 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 264 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 122 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 132 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_23 GSE104399.ESR1.breast_tumor_Male_23 272 bp overlap
EZH2 6 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 247 bp overlap
ChIP GM23338 ENCFF613YON 476 bp overlap
ChIP H1 ENCFF232NZA 544 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 544 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 399 bp overlap
ChIP neural progenitor cell ENCFF472NFV 544 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 384 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 357 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 133 bp overlap
ChIP neural-progenitor GSE62718.FOXP1.neural-progenitor 229 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 462 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 289 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 544 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 403 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 539 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 340 bp overlap
KDM5B 2 datasets
ChIP SUM185 GSE46055.KDM5B.SUM185 187 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 163 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
MAX 4 datasets
ChIP SK-N-SH ENCFF285LXR 350 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 201 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 144 bp overlap
ChIP WTC11 ENCFF223QFY 122 bp overlap
MED1 4 datasets
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 152 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 300 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 544 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 273 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 96 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 132 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 544 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 70 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 267 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 212 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 544 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 203 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 275 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
OSR1 1 dataset
ChIP SK-N-SH ENCFF025PMY 268 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 2 datasets
ChIP suprapubic skin ENCFF832BBO 287 bp overlap
ChIP vagina ENCFF384GAB 315 bp overlap
POU5F1 2 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 301 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 544 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 239 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 414 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 132 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 544 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 544 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 212 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 509 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 215 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 164 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 110 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 544 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 58 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 544 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 210 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 300 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 308 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
TAF1 3 datasets
ChIP SK-N-SH ENCFF630ERV 262 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 91 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 353 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCFF866POT 399 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 379 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 325 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 133 bp overlap
TP53 2 datasets
ChIP GM06170 GSE55727.TP53.GM06170 231 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 237 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 256 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
UBTF 1 dataset
ChIP GM12878 ENCSR459FTB.UBTF.GM12878 52 bp overlap
ZBTB33 1 dataset
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 412 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 75 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 87 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 53 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 375 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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