chr9 : 1,046,106 – 1,046,417
311 bp 34 TFs 3 linked genes
This 311 bp open chromatin element is linked to LINC01230, ENSG00000286684, and DMRT2 and is bound by 34 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01230 482 bp At TSS Proximity
ENSG00000286684 3.5 kb Proximal Proximity
DMRT2 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:1,041,106 – 1,051,417
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 311 bp overlap
BRD4 3 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 252 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 99 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 141 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 73 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 133 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 59 bp overlap
EZH2 14 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 311 bp overlap
ChIP GM23338 ENCFF613YON 311 bp overlap
ChIP GM23338 ENCFF886DXX 210 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 281 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 143 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 311 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 85 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 311 bp overlap
ChIP SK-N-SH ENCFF657FZK 69 bp overlap
ChIP astrocyte ENCFF365JTP 187 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 311 bp overlap
ChIP hESC GSE113817.EZH2.hESC 269 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 210 bp overlap
ChIP keratinocyte ENCFF070STK 70 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 311 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 247 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 311 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 311 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 311 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 311 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 159 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 83 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 70 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 311 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 258 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 285 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 250 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 311 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 77 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 77 bp overlap
RNF2 2 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 70 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 311 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 298 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 311 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 311 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 311 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 311 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 311 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 240 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 311 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 311 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 311 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 289 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 205 bp overlap
TAF15 1 dataset
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 184 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 161 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 302 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 222 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap