chr9 : 69,499,475 – 69,500,865
1,390 bp 110 TFs 3 linked genes
This 1.4 kb open chromatin element is linked to APBA1, ENTREP1, and PTAR1 and is bound by 110 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
APBA1 172.3 kb Distal Multiome
ENTREP1 174.8 kb Distal Multiome
PTAR1 260.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:69,494,475 – 69,505,865
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
ALX3 2 datasets
Motif DE_36h DE_36h-ALX3_MA0634.2 6 bp overlap
Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap
ARGFX 2 datasets
Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
Alx1 2 datasets
Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 2 datasets
Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arid3a 2 datasets
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Arx 2 datasets
Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BCL11A 2 datasets
Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap
Motif DE_48h DE_48h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 111 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 385 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 262 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 228 bp overlap
DMRTC2 2 datasets
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
DRGX 2 datasets
Motif DE_36h DE_36h-DRGX_MA1481.2 6 bp overlap
Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EMX1 2 datasets
Motif DE_36h DE_36h-EMX1_MA0612.3 6 bp overlap
Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap
EMX2 2 datasets
Motif DE_36h DE_36h-EMX2_MA0886.2 6 bp overlap
Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap
EN1 2 datasets
Motif DE_36h DE_36h-EN1_MA0027.3 6 bp overlap
Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap
EN2 2 datasets
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 414 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 332 bp overlap
ESX1 2 datasets
Motif DE_36h DE_36h-ESX1_MA0644.3 7 bp overlap
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
EVX1 2 datasets
Motif DE_36h DE_36h-EVX1_MA0887.2 6 bp overlap
Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap
EVX2 2 datasets
Motif DE_36h DE_36h-EVX2_MA0888.2 6 bp overlap
Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 81 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 621 bp overlap
ChIP DE DE-FOXA2-2 439 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 762 bp overlap
ChIP DE DE-GATA4-2 891 bp overlap
ChIP DE DE-GATA4-2 286 bp overlap
ChIP foregut GSE117136.GATA4.foregut 308 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 254 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 697 bp overlap
ChIP DE DE-GATA6-2 822 bp overlap
ChIP DE DE-GATA6-2 276 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1348 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 926 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 221 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 937 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 648 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1328 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 710 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 245 bp overlap
ChIP foregut GSE117136.GATA6.foregut 469 bp overlap
GBX1 2 datasets
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
GSX1 2 datasets
Motif DE_36h DE_36h-GSX1_MA0892.2 6 bp overlap
Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap
GSX2 2 datasets
Motif DE_36h DE_36h-GSX2_MA0893.3 7 bp overlap
Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap
HNF1A 2 datasets
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_36h DE_36h-HNF1B_MA0153.2 13 bp overlap
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HOXA1 2 datasets
Motif DE_36h DE_36h-HOXA1_MA1495.2 6 bp overlap
Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap
HOXA2 2 datasets
Motif DE_36h DE_36h-HOXA2_MA0900.3 6 bp overlap
Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap
HOXA3 2 datasets
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA5 2 datasets
Motif DE_36h DE_36h-HOXA5_MA0158.2 8 bp overlap
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
HOXB1 2 datasets
Motif DE_36h DE_36h-HOXB1_MA2093.1 7 bp overlap
Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap
HOXB2 2 datasets
Motif DE_36h DE_36h-HOXB2_MA0902.3 6 bp overlap
Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap
HOXB3 2 datasets
Motif DE_36h DE_36h-HOXB3_MA0903.2 6 bp overlap
Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap
HOXB5 2 datasets
Motif DE_36h DE_36h-HOXB5_MA0904.3 6 bp overlap
Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap
HOXC8 2 datasets
Motif DE_36h DE_36h-HOXC8_MA1505.2 6 bp overlap
Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
ISX 2 datasets
Motif DE_36h DE_36h-ISX_MA0654.2 6 bp overlap
Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 376 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 357 bp overlap
LBX1 2 datasets
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LHX5 2 datasets
Motif DE_36h DE_36h-LHX5_MA1519.2 7 bp overlap
Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap
LHX6 2 datasets
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
LHX9 2 datasets
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
LMX1A 2 datasets
Motif DE_36h DE_36h-LMX1A_MA0702.3 7 bp overlap
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
LMX1B 2 datasets
Motif DE_36h DE_36h-LMX1B_MA0703.3 8 bp overlap
Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap
Lhx1 2 datasets
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap
Lhx4 2 datasets
Motif DE_36h DE_36h-Lhx4_MA0704.2 6 bp overlap
Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap
Lhx8 2 datasets
Motif DE_36h DE_36h-Lhx8_MA0705.2 6 bp overlap
Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap
MAFF 2 datasets
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
MEOX1 2 datasets
Motif DE_36h DE_36h-MEOX1_MA0661.2 7 bp overlap
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
MEOX2 2 datasets
Motif DE_36h DE_36h-MEOX2_MA0706.2 7 bp overlap
Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
MIXL1 2 datasets
Motif DE_36h DE_36h-MIXL1_MA0662.2 6 bp overlap
Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap
MNX1 2 datasets
Motif DE_36h DE_36h-MNX1_MA0707.3 6 bp overlap
Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap
MYC 1 dataset
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
NANOG 1 dataset
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 114 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 259 bp overlap
NKX6-2 2 datasets
Motif DE_36h DE_36h-NKX6-2_MA0675.2 6 bp overlap
Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap
NOTO 2 datasets
Motif DE_36h DE_36h-NOTO_MA0710.2 7 bp overlap
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
Nfatc2 1 dataset
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 349 bp overlap
PAX4 2 datasets
Motif DE_36h DE_36h-PAX4_MA0068.2 8 bp overlap
Motif DE_48h DE_48h-PAX4_MA0068.2 8 bp overlap
PDX1 2 datasets
Motif DE_36h DE_36h-PDX1_MA0132.3 6 bp overlap
Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap
PHOX2A 2 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 2 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU3F2 2 datasets
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU6F1 2 datasets
Motif DE_36h DE_36h-POU6F1_MA0628.2 6 bp overlap
Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap
POU6F2 2 datasets
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
PRRX1 2 datasets
Motif DE_36h DE_36h-PRRX1_MA0716.2 6 bp overlap
Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap
PRRX2 2 datasets
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
RAX2 2 datasets
Motif DE_36h DE_36h-RAX2_MA0717.2 6 bp overlap
Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_48h DE_48h-RFX1_MA0509.3 16 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 299 bp overlap
SHOX 2 datasets
Motif DE_36h DE_36h-SHOX_MA0630.2 6 bp overlap
Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 800 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 391 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 386 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 472 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 293 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 594 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 485 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 291 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 378 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 248 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 278 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 562 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 482 bp overlap
Shox2 2 datasets
Motif DE_36h DE_36h-Shox2_MA0720.2 6 bp overlap
Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 217 bp overlap
TLX2 2 datasets
Motif DE_36h DE_36h-TLX2_MA1577.2 6 bp overlap
Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap
UNCX 2 datasets
Motif DE_36h DE_36h-UNCX_MA0721.2 6 bp overlap
Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap
VAX1 2 datasets
Motif DE_36h DE_36h-VAX1_MA0722.2 7 bp overlap
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
VAX2 2 datasets
Motif DE_36h DE_36h-VAX2_MA0723.3 6 bp overlap
Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap
VSX1 2 datasets
Motif DE_36h DE_36h-VSX1_MA0725.2 7 bp overlap
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
VSX2 2 datasets
Motif DE_36h DE_36h-VSX2_MA0726.2 7 bp overlap
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF157 1 dataset
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF449 2 datasets
Motif DE_36h DE_36h-ZNF449_MA1656.2 10 bp overlap
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF549 2 datasets
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
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