chr9 : 77,128,274 – 77,128,777
503 bp 81 TFs 2 linked genes
This 503 bp open chromatin element is linked to VPS13A and PRUNE2 and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VPS13A 48.9 kb Distal Multiome
PRUNE2 222.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:77,123,274 – 77,133,777
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP H1 ENCFF295GZO 477 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 232 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 164 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 201 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 165 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 184 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 269 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 240 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 480 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 269 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
CTNNB1 2 datasets
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 292 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 298 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 393 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 135 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 289 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 154 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 342 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 367 bp overlap
EZH2 1 dataset
ChIP hESC GSE113817.EZH2.hESC 241 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 266 bp overlap
ChIP WTC11 ENCFF338WGC 476 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 364 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 350 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 219 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 287 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 225 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 258 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 306 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 184 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 385 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 352 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 250 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 275 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 164 bp overlap
ChIP H1 ENCFF747ZPQ 126 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 503 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 367 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 405 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 323 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 262 bp overlap
ChIP hESC GSE20650.NANOG.hESC 188 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCFF029AAD 281 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 205 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 192 bp overlap
ChIP GM23338 ENCFF333SNB 280 bp overlap
ChIP H1 ENCFF698ZAP 179 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 503 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 137 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 393 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 237 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 206 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 245 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 125 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 235 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 280 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 371 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 295 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 269 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 236 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 403 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 503 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 366 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 439 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 295 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 252 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 288 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 262 bp overlap
ChIP WTC11 ENCFF688PEU 447 bp overlap
ChIP WTC11 ENCFF688PEU 247 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 174 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 288 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 223 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 348 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 347 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 330 bp overlap
ChIP H1 ENCFF778PAX 150 bp overlap
ChIP Ishikawa ENCFF772OTG 286 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 122 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 204 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 244 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 503 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 376 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 328 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 232 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 422 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 126 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF114 3 datasets
ChIP GM23338 ENCFF631OSW 357 bp overlap
ChIP GM23338 ENCFF631OSW 279 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 311 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 185 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 498 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF585B 2 datasets
ChIP HEK293 ENCFF657XIZ 367 bp overlap
ChIP HEK293 ENCSR011XCI.ZNF585B.HEK293 268 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN18 2 datasets
ChIP WTC11 ENCFF867QWX 257 bp overlap
ChIP WTC11 ENCFF867QWX 169 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap