chr9 : 85,630,543 – 85,631,301
758 bp 65 TFs 2 linked genes
This 758 bp open chromatin element is linked to AGTPBP1 and ENSG00000290924 and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AGTPBP1 111.1 kb Distal Multiome
ENSG00000290924 174.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:85,625,543 – 85,636,301
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 114 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 67 bp overlap
CEBPA 1 dataset
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 125 bp overlap
CEBPG 2 datasets
Motif DE_72h DE_72h-CEBPG_MA0838.1 10 bp overlap
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 276 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 288 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 335 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 339 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 151 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 95 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF274GAT 326 bp overlap
ChIP BLaER1 ENCFF364PUR 328 bp overlap
ChIP BLaER1 ENCFF460KDD 288 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 51 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 278 bp overlap
ETV2::DRGX 1 dataset
Motif DE_72h DE_72h-ETV2DRGX_MA1940.2 12 bp overlap
ETV2::HOXB13 1 dataset
Motif DE_72h DE_72h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV5::DRGX 1 dataset
Motif DE_72h DE_72h-ETV5DRGX_MA1944.2 12 bp overlap
FLI1::DRGX 1 dataset
Motif DE_72h DE_72h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 564 bp overlap
ChIP DE DE-FOXA2-2 458 bp overlap
GATA2 2 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 220 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 680 bp overlap
ChIP DE DE-GATA4-2 668 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 284 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 503 bp overlap
ChIP DE DE-GATA6-2 642 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 393 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 337 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 556 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 323 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 511 bp overlap
ChIP foregut GSE117136.GATA6.foregut 359 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Hmga1 1 dataset
Motif DE_72h DE_72h-Hmga1_MA2124.1 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 284 bp overlap
LIN54 1 dataset
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 434 bp overlap
MEF2B 1 dataset
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 282 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 284 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 207 bp overlap
NFIL3 1 dataset
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 208 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 278 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 50 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 324 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU2F1 1 dataset
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU5F1B 1 dataset
Motif DE_72h DE_72h-POU5F1B_MA0792.1 9 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 457 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 521 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 178 bp overlap
SOX10 2 datasets
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 314 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TEAD1 4 datasets
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 220 bp overlap
TEAD4 3 datasets
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TP63 6 datasets
ChIP keratinocyte GSE56674.TP63.keratinocyte 171 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 212 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 259 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 211 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 241 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 154 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF354C 1 dataset
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
Zfp809 2 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
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