chr9 : 86,491,030 – 86,491,730
700 bp 79 TFs 2 linked genes
This 700 bp open chromatin element is linked to TUT7 and ISCA1 and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TUT7 137.1 kb Distal Multiome
ISCA1 209.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:86,486,030 – 86,496,730
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 313 bp overlap
BRD4 3 datasets
ChIP RH4 GSE83726.BRD4.RH4 688 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 261 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 229 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 528 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 700 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 392 bp overlap
EZH2 2 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 81 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 105 bp overlap
Elf5 2 datasets
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FERD3L 1 dataset
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 3 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 329 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 290 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 174 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 603 bp overlap
ChIP DE DE-FOXA2-2 515 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 271 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 167 bp overlap
GATA2 2 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 696 bp overlap
ChIP DE DE-GATA4-2 653 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 403 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 700 bp overlap
ChIP DE DE-GATA6-2 700 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 596 bp overlap
ChIP foregut GSE117136.GATA6.foregut 341 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 368 bp overlap
GRHL2 3 datasets
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 210 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 311 bp overlap
HIC2 5 datasets
Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
IKZF2 2 datasets
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 213 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 327 bp overlap
MEIS1 5 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS3 2 datasets
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 399 bp overlap
MYOD1 6 datasets
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 130 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 391 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 186 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 315 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 262 bp overlap
NFIB 3 datasets
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NFIC::TLX1 3 datasets
Motif DE_48h DE_48h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_72h DE_72h-NFICTLX1_MA0119.1 14 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 215 bp overlap
PBX3 2 datasets
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 352 bp overlap
PKNOX1 2 datasets
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
PPARG 2 datasets
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
Motif DE_72h DE_72h-PPARG_MA0066.2 19 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 584 bp overlap
Runx1 2 datasets
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 128 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 269 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 188 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 245 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 700 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 429 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 269 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 287 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 294 bp overlap
SNAI2 3 datasets
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SNAI3 2 datasets
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 2 datasets
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 201 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 597 bp overlap
Stat6 3 datasets
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
TP53 22 datasets
Motif DE_60h DE_60h-TP53_MA0106.3 18 bp overlap
Motif DE_72h DE_72h-TP53_MA0106.3 18 bp overlap
ChIP GM00011 GSE55727.TP53.GM00011 257 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 383 bp overlap
ChIP H9 GSE142050.TP53.H9 301 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 183 bp overlap
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 250 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 481 bp overlap
ChIP HCT-116_siGLIS2-1-5FU GSE125927.TP53.HCT-116_siGLIS2-1-5FU 282 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 384 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 390 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 265 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 552 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 612 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 350 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 335 bp overlap
ChIP U2OS_DXR GSE46641.TP53.U2OS_DXR 251 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 501 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 312 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 288 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 372 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 419 bp overlap
TP63 18 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 363 bp overlap
Motif DE_60h DE_60h-TP63_MA0525.2 18 bp overlap
Motif DE_72h DE_72h-TP63_MA0525.2 18 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 171 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 195 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 140 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 256 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 494 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 456 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 348 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP63.keratinocyte_ADRIA 173 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 347 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 456 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 379 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 337 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 343 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 320 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 269 bp overlap
TP73 2 datasets
Motif DE_60h DE_60h-TP73_MA0861.2 16 bp overlap
Motif DE_72h DE_72h-TP73_MA0861.2 16 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 3 datasets
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
Vdr 2 datasets
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 157 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 109 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 380 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 205 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN3 3 datasets
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 63 bp overlap
ZNF213 3 datasets
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF354A 2 datasets
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 3 datasets
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF449 1 dataset
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
ZNF574 3 datasets
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
Motif DE_72h DE_72h-ZNF574_MA1982.2 14 bp overlap
ZNF8 2 datasets
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
Motif DE_72h DE_72h-ZNF8_MA1718.1 20 bp overlap
Zic2 2 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap