chr9 : 86,942,576 – 86,943,373
797 bp 109 TFs 2 linked genes
This 797 bp open chromatin element is linked to GAS1 and GAS1RR and is bound by 109 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GAS1 4.1 kb Proximal Proximity
GAS1RR 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:86,937,576 – 86,948,373
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 273 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 204 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 98 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 96 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 295 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 232 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 137 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 356 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 88 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 797 bp overlap
CDK2 1 dataset
ChIP T-47D_PROGESTIN_5M GSE53855.CDK2.T-47D_PROGESTIN_5M 167 bp overlap
CDK8 1 dataset
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 211 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 250 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 77 bp overlap
ELF1 1 dataset
ChIP SK-N-SH ENCSR000BTA.ELF1.SK-N-SH 148 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 650 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 150 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 330 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 261 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 360 bp overlap
ChIP keratinocyte ENCFF070STK 175 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 291 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 110 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 723 bp overlap
FOS 1 dataset
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 87 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 85 bp overlap
FOXA1 24 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 137 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 78 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 57 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 342 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 111 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 234 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 316 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 172 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 232 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 226 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 60 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 127 bp overlap
ChIP primary-prostate-cancer_P1_DSG GSE114737.FOXA1.primary-prostate-cancer_P1_DSG 408 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 417 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 193 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 313 bp overlap
ChIP prostate_2484 GSE130408.FOXA1.prostate_2484 155 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 194 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 241 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 224 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 341 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 319 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 445 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 389 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 781 bp overlap
ChIP DE DE-FOXA2-2 677 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 305 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 564 bp overlap
ChIP DE DE-GATA4-2 549 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 311 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 237 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 544 bp overlap
ChIP DE DE-GATA6-2 672 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 350 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 435 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 786 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 470 bp overlap
ChIP foregut GSE117136.GATA6.foregut 110 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 57 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 267 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 417 bp overlap
HOXB13 17 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 343 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 208 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 261 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 234 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 158 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 273 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 339 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 447 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 216 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 237 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 156 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 434 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 440 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 401 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 386 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 294 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 516 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 115 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 425 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 510 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 249 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 160 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 487 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 316 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 397 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 362 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 181 bp overlap
MED1 5 datasets
ChIP RH4 GSE83726.MED1.RH4 81 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 161 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 324 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 180 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 389 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 87 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 81 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 248 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 261 bp overlap
MYBL2 1 dataset
ChIP HepG2 ENCFF176QIX 86 bp overlap
MYC 1 dataset
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 345 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 298 bp overlap
MYNN 2 datasets
ChIP HEK293 ENCFF897QZG 82 bp overlap
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 95 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 244 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 250 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 158 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 797 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 765 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 526 bp overlap
ChIP hESC GSE18292.NANOG.hESC 114 bp overlap
ChIP hESC GSE20650.NANOG.hESC 313 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 250 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 425 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 210 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 610 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 79 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 107 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 316 bp overlap
POLR2A 2 datasets
ChIP SK-N-SH ENCFF683PFH 650 bp overlap
ChIP prostate gland ENCFF881OMH 154 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 761 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 672 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 291 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 563 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 208 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 312 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 311 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 213 bp overlap
RAD21 1 dataset
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 205 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 508 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 766 bp overlap
RARB 1 dataset
ChIP SK-N-SH ENCFF475WOR 305 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 293 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 176 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 797 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 337 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 249 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 112 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 303 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 225 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 95 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 266 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 272 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 459 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 450 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 793 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 700 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 587 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 698 bp overlap
SMARCA4 8 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 222 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 210 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 106 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 551 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 205 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 317 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 651 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 385 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 246 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 327 bp overlap
SMARCC1 10 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 606 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 591 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 71 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 510 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 147 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 66 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 797 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 231 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 459 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 404 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 110 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 273 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 166 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 88 bp overlap
ChIP HepG2 ENCFF125ABE 71 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 492 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF265CEM 92 bp overlap
ChIP HEK293 ENCFF582MWI 506 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 90 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 277 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 217 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 210 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 447 bp overlap
ZBTB33 1 dataset
ChIP SK-N-SH ENCFF667JYU 101 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 102 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 274 bp overlap
ZNF184 2 datasets
ChIP HEK293 ENCFF221CII 357 bp overlap
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 229 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCFF641ICT 308 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 135 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 566 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 228 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 96 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 182 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 223 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 555 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 226 bp overlap