chr9 : 94,696,327 – 94,696,930
603 bp 18 TFs 2 linked genes
This 603 bp open chromatin element is linked to AOPEP and PCAT7 and is bound by 18 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AOPEP 30.0 kb Distal Multiome
PCAT7 141.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:94,691,327 – 94,701,930
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 113 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 305 bp overlap
ChIP BLaER1 ENCFF798NMV 120 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 344 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 415 bp overlap
ChIP DE DE-FOXA2-2 488 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 489 bp overlap
ChIP DE DE-GATA4-2 603 bp overlap
ChIP foregut GSE117136.GATA4.foregut 460 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 309 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 487 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 537 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 597 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 603 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 603 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 521 bp overlap
ChIP foregut GSE117136.GATA6.foregut 400 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 357 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 347 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 201 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 84 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 603 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 581 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 503 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 272 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 512 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 440 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 407 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 490 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 152 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 271 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 298 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 490 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 281 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 226 bp overlap