chr9 : 94,746,310 – 94,746,827
517 bp 82 TFs 2 linked genes
This 517 bp open chromatin element is linked to AOPEP and PCAT7 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AOPEP 19.9 kb Distal Multiome
PCAT7 191.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:94,741,310 – 94,751,827
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 165 bp overlap
ARID3A 2 datasets
ChIP Hep-G2 GSE97661.ARID3A.Hep-G2 81 bp overlap
ChIP HepG2 ENCFF341DES 360 bp overlap
ARNT 2 datasets
ChIP 501-mel GSE95280.ARNT.501-mel 69 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 365 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 78 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 224 bp overlap
BRD4 2 datasets
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 223 bp overlap
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 275 bp overlap
CDK9 1 dataset
ChIP A-375 GSE128080.CDK9.A-375 82 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 165 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 247 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 192 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 403 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 166 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 165 bp overlap
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 223 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 285 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 333 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 186 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 121 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 89 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 270 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 318 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 159 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 249 bp overlap
ChIP HepG2 ENCFF361KNY 225 bp overlap
ChIP HepG2 ENCFF740VZW 88 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 249 bp overlap
FOXA2 11 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 251 bp overlap
ChIP DE DE-FOXA2-1 511 bp overlap
ChIP DE DE-FOXA2-2 423 bp overlap
ChIP HepG2 ENCFF533COJ 104 bp overlap
ChIP HepG2 ENCFF570ABM 178 bp overlap
ChIP HepG2 ENCFF894AYY 170 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 269 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 170 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 282 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 144 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 232 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 290 bp overlap
FOXP1 2 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 226 bp overlap
ChIP HepG2 ENCFF823ERM 267 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 267 bp overlap
ChIP HepG2 ENCFF462ULY 341 bp overlap
GATA2 9 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 274 bp overlap
ChIP HepG2 ENCFF905PYM 326 bp overlap
ChIP SH-SY5Y ENCFF485YIB 317 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 327 bp overlap
ChIP SK-N-SH ENCFF764OZD 355 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 225 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 181 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 189 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA3 2 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 269 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 277 bp overlap
GATA4 11 datasets
ChIP A-549 GSE85002.GATA4.A-549 229 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 517 bp overlap
ChIP DE DE-GATA4-2 517 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 517 bp overlap
ChIP Hep-G2 ENCSR590CNM.GATA4.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF309FOQ 385 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 347 bp overlap
ChIP foregut GSE117136.GATA4.foregut 517 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 517 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 492 bp overlap
GATA6 22 datasets
ChIP AGS GSE51705.GATA6.AGS 354 bp overlap
ChIP AGS GSE51936.GATA6.AGS 213 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 96 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 160 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 270 bp overlap
ChIP DE DE-GATA6-1 517 bp overlap
ChIP DE DE-GATA6-2 517 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 507 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 517 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 517 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 517 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 145 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 223 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 499 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 517 bp overlap
ChIP foregut GSE117136.GATA6.foregut 517 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 454 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 446 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 492 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 407 bp overlap
GFI1 3 datasets
ChIP Hep-G2 ENCSR849FVL.GFI1.Hep-G2 226 bp overlap
ChIP HepG2 ENCFF472INF 365 bp overlap
ChIP HepG2 ENCFF472INF 126 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 335 bp overlap
HBP1 1 dataset
ChIP Hep-G2 ENCSR616WEG.HBP1.Hep-G2 126 bp overlap
HDAC2 1 dataset
ChIP HepG2 ENCFF990GUQ 363 bp overlap
HHEX 2 datasets
ChIP Hep-G2 ENCSR656JZL.HHEX.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF618PVM 263 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 143 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 154 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 348 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 176 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 274 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 339 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 472 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 408 bp overlap
KDM1A 3 datasets
ChIP HepG2 ENCFF240UWG 390 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 355 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 262 bp overlap
MNX1 2 datasets
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 228 bp overlap
ChIP HepG2 ENCFF938KYA 401 bp overlap
NFE2L2 1 dataset
ChIP A-375_DMSO GSE57431.NFE2L2.A-375_DMSO 144 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 282 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 151 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 116 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 70 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 326 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 267 bp overlap
PCBP2 1 dataset
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 172 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 227 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 242 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 517 bp overlap
PITX1 2 datasets
ChIP HepG2 ENCFF468QTQ 345 bp overlap
ChIP HepG2 ENCFF468QTQ 144 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP neural cell ENCFF604SPB 245 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 266 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 320 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 265 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 280 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 359 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 360 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 336 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 336 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 180 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 467 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 497 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 517 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 422 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 394 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 381 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 161 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 517 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 108 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 153 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 259 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 221 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 405 bp overlap
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 212 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 203 bp overlap
ChIP HepG2 ENCFF931FHV 311 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 254 bp overlap
TBX2 2 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 279 bp overlap
ChIP HepG2 ENCFF811TLA 415 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 395 bp overlap
TCF7L2 4 datasets
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 246 bp overlap
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 212 bp overlap
ChIP HepG2 ENCFF510OLG 377 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 263 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 310 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 414 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 494 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 211 bp overlap
ZFHX3 1 dataset
ChIP HepG2 ENCFF082SJV 332 bp overlap
ZFP82 1 dataset
ChIP HepG2 ENCFF665HBX 271 bp overlap
ZNF609 2 datasets
ChIP Hep-G2 ENCSR407BPU.ZNF609.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF900FRP 370 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 139 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 240 bp overlap