chr1 : 18,649,792 – 18,650,569
777 bp 127 TFs 2 linked genes
This 777 bp open chromatin element is linked to PAX7 and ALDH4A1 and is bound by 127 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PAX7 18.7 kb Distal Multiome
ALDH4A1 252.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:18,644,792 – 18,655,569
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 135 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 212 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 206 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 349 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 261 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 323 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 249 bp overlap
BRD4 3 datasets
ChIP HT29 GSE73319.BRD4.HT29 731 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 141 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 242 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 111 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 217 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 242 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 173 bp overlap
CTCF 6 datasets
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP H9 ENCFF152GTF 375 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 133 bp overlap
ChIP endodermal cell ENCFF471YCZ 373 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 252 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 269 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 224 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 266 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 245 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 154 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 339 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 124 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 225 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 292 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 11 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 777 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 282 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 604 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 603 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 695 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 219 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 443 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 241 bp overlap
ChIP neural progenitor cell ENCFF018MKA 92 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 530 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 606 bp overlap
ChIP DE DE-FOXA2-2 532 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 183 bp overlap
GATA1::TAL1 2 datasets
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 553 bp overlap
ChIP DE DE-GATA4-2 769 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 274 bp overlap
ChIP foregut GSE117136.GATA4.foregut 528 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 272 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 158 bp overlap
ChIP DE DE-GATA6-1 713 bp overlap
ChIP DE DE-GATA6-2 777 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 777 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 777 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 777 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 743 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 777 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 777 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 740 bp overlap
ChIP foregut GSE117136.GATA6.foregut 556 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 428 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 166 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 263 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 303 bp overlap
Gata3 2 datasets
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 2 datasets
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 255 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
HSF1 1 dataset
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 396 bp overlap
JARID2 6 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 261 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 321 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 368 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 283 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 269 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 357 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 284 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 544 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 321 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 157 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 191 bp overlap
ChIP K562 ENCFF128TYE 259 bp overlap
ChIP K562 ENCFF934ZRG 189 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 219 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 196 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 164 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 130 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 67 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 218 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 164 bp overlap
Msgn1 1 dataset
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 414 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 140 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 131 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 322 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 159 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 198 bp overlap
ChIP hESC GSE18292.NANOG.hESC 62 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_72h DE_72h-NFATC4_MA1525.3 9 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 203 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 144 bp overlap
ChIP K562 ENCFF047YKA 152 bp overlap
ChIP K562 ENCFF163BSI 193 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 251 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
ONECUT3 1 dataset
Motif DE_72h DE_72h-ONECUT3_MA0757.2 12 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 63 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 419 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 603 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 204 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 217 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 172 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 149 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 222 bp overlap
RBPJ 2 datasets
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 288 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 283 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 259 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 154 bp overlap
RUNX2 2 datasets
Motif DE_72h DE_72h-RUNX2_MA0511.2 9 bp overlap
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 115 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 765 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 608 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 650 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 587 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 428 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 515 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 611 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 411 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 190 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 178 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 186 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 661 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 201 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 349 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 458 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SREBF1 2 datasets
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 377 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 363 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 292 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 122 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 289 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 342 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 144 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat5b 1 dataset
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 192 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 323 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 144 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 315 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 144 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 55 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 114 bp overlap
TFAP2A 2 datasets
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 6 datasets
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 275 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 538 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 148 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TFAP2E 1 dataset
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE15780.TP53.SaOS-2 142 bp overlap
TRPS1 3 datasets
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 193 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
ZBED5 1 dataset
ChIP HepG2 ENCFF991QZL 317 bp overlap
ZBTB26 1 dataset
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 352 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 444 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 561 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 371 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 182 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 204 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 566 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap