chr9 : 97,419,540 – 97,419,943
403 bp 66 TFs 2 linked genes
This 403 bp open chromatin element is linked to TDRD7 and ENSG00000286375 and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TDRD7 7.4 kb Proximal Proximity
ENSG00000286375 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:97,414,540 – 97,424,943
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 149 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 61 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 59 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 130 bp overlap
BRD4 1 dataset
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 190 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 100 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 68 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 121 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF792THT 106 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 53 bp overlap
DPF2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 202 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 170 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 243 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 399 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 85 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 247 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 146 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 234 bp overlap
FOSL1 3 datasets
ChIP HCT116 ENCFF540ZXN 125 bp overlap
ChIP HepG2 ENCFF095FBN 95 bp overlap
ChIP MG-63-3 GSE74230.FOSL1.MG-63-3 136 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 53 bp overlap
ChIP HepG2 ENCFF548CXY 143 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 116 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 119 bp overlap
ChIP DE DE-FOXA2-1 403 bp overlap
ChIP DE DE-FOXA2-2 403 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 100 bp overlap
GATA2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 282 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 343 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 135 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 61 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 403 bp overlap
ChIP DE DE-GATA4-2 403 bp overlap
ChIP foregut GSE117136.GATA4.foregut 289 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 154 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 403 bp overlap
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 203 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 203 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 331 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap
ChIP foregut GSE117136.GATA6.foregut 269 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 221 bp overlap
HNF4A 5 datasets
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 110 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 179 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 92 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 115 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 95 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 117 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 135 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 363 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 318 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 368 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 192 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 76 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 214 bp overlap
JUND 3 datasets
ChIP SK-N-SH ENCFF551NEQ 84 bp overlap
ChIP SK-N-SH ENCFF971JKN 102 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 126 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 100 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 71 bp overlap
MAFK 3 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 57 bp overlap
ChIP HepG2 ENCFF743ZOF 60 bp overlap
ChIP IMR-90 ENCFF336DHZ 65 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 98 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 244 bp overlap
NANOG 5 datasets
ChIP WA01 ERP004238.NANOG.WA01 251 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 189 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 378 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 217 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 191 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Triptolide-30min GSE118494.NCAPH2.IMR-90_Triptolide-30min 163 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 61 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 83 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 102 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 182 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 98 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 235 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 145 bp overlap
ChIP transverse colon ENCFF610RWV 61 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 138 bp overlap
RELA 27 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 297 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 93 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 93 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 229 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 393 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 339 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 246 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 380 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 110 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 301 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 317 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 351 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 390 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 182 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 279 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 206 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 147 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 283 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 278 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 323 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 214 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 165 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 403 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 327 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 403 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 380 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 403 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 403 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 403 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 161 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 403 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 289 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 297 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 61 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 50 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 190 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 161 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 403 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 228 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 318 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 81 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 370 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 215 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 87 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 335 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 355 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 110 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 165 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 244 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 287 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 395 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 348 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 139 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 274 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 128 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 192 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 148 bp overlap