chr9 : 98,792,170 – 98,792,795
625 bp 57 TFs 3 linked genes
This 625 bp open chromatin element is linked to ANKS6, GALNT12, and GABBR2 and is bound by 57 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ANKS6 3.7 kb Proximal Proximity
GALNT12 15.0 kb Distal Multiome
GABBR2 85.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:98,787,170 – 98,797,795
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 116 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 122 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 224 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 476 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 625 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 404 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 355 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 169 bp overlap
ARID2 2 datasets
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 261 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 241 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 173 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 195 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 224 bp overlap
CTCF 2 datasets
ChIP CD14 ENCSR000ATN.CTCF.CD14 417 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 159 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 385 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 243 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 279 bp overlap
ESR1 17 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 198 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 219 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 224 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 260 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 173 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 225 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 236 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 216 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 276 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 370 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 247 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 260 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 287 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 221 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 122 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 122 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 175 bp overlap
FOXA1 14 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 379 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 295 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 188 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 167 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 319 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 258 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 156 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 299 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 200 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 319 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 226 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 341 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 317 bp overlap
ChIP DE DE-FOXA2-1 358 bp overlap
ChIP DE DE-FOXA2-2 401 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 286 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 210 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 196 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 182 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 182 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 287 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 200 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 215 bp overlap
GATA3 15 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 246 bp overlap
ChIP MCF-7 ENCFF352QVM 375 bp overlap
ChIP MCF-7 ENCFF437NQS 296 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 408 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 373 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 365 bp overlap
ChIP MCF-7 GSE40129.GATA3.MCF-7 195 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 136 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 307 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 154 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 199 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 208 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 334 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 236 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 204 bp overlap
ChIP DE DE-GATA4-1 557 bp overlap
ChIP DE DE-GATA4-2 602 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 307 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 216 bp overlap
ChIP foregut GSE117136.GATA4.foregut 365 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 246 bp overlap
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 533 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 315 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 543 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 285 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 625 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 496 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 315 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 337 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 445 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 317 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 319 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 181 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 378 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 352 bp overlap
HDAC1 3 datasets
ChIP K562 ENCFF928TKZ 155 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 213 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 434 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 155 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 123 bp overlap
HDGF 4 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 252 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 241 bp overlap
ChIP K562 ENCFF195BET 183 bp overlap
ChIP K562 ENCFF195BET 383 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 249 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 106 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 243 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 177 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 194 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 134 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 164 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 107 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 282 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 295 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 85 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 336 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 272 bp overlap
NR3C1_mut 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1_mut.MCF-7_E2_Dex 253 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 279 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 262 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 246 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 295 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 91 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 434 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 263 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 282 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 101 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 272 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 228 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 207 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 345 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 396 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 397 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 277 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 72 bp overlap
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 195 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 203 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 197 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 200 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 275 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 270 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 311 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 197 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 232 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 279 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 291 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 216 bp overlap
ZNF337 1 dataset
ChIP HEK293T GSE78099.ZNF337.HEK293T 262 bp overlap