chr9 : 99,508,252 – 99,508,962
710 bp 42 TFs 2 linked genes
This 710 bp open chromatin element is linked to SEC61B and ALG2 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SEC61B 286.4 kb Distal Multiome
ALG2 286.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:99,503,252 – 99,513,962
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 247 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 644 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 251 bp overlap
ChIP DE DE-FOXA2-1 311 bp overlap
ChIP DE DE-FOXA2-2 710 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 211 bp overlap
ChIP DE DE-GATA4-1 710 bp overlap
ChIP DE DE-GATA4-2 710 bp overlap
ChIP foregut GSE117136.GATA4.foregut 652 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 710 bp overlap
ChIP DE DE-GATA6-2 710 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 285 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 710 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 250 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 710 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 79 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NBN 1 dataset
ChIP MCF-10A GSE93038.NBN.MCF-10A 246 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR076YPO.RNF2.K-562 72 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 662 bp overlap
SOX18 1 dataset
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 85 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap