chr1 : 18,722,251 – 18,722,870
619 bp 86 TFs 2 linked genes
This 619 bp open chromatin element is linked to PAX7 and ALDH4A1 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PAX7 91.0 kb Distal Multiome
ALDH4A1 180.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:18,717,251 – 18,727,870
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 251 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 174 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 239 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 103 bp overlap
BRD4 5 datasets
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 215 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 306 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 619 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 258 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 254 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 254 bp overlap
CTCF 3 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 392 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 246 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 516 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
ERF::FOXI1 2 datasets
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 2 datasets
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap
ESR1 14 datasets
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 252 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 340 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 336 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 164 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 152 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 340 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 336 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 209 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 207 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 207 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 160 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 160 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 257 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 180 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 181 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 146 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_72h DE_72h-ETV5FOXI1_MA1946.2 12 bp overlap
EZH2 7 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 237 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 179 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 555 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 78 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 200 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 360 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 287 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 6 datasets
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 237 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 264 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 247 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 318 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 329 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 619 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 2 datasets
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXH1 2 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXN3 4 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
Foxn1 2 datasets
Motif DE_48h DE_48h-Foxn1_MA1684.1 6 bp overlap
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
GATA1 2 datasets
ChIP K-562 ENCSR000EWM.GATA1.K-562 153 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 205 bp overlap
GATA2 7 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 183 bp overlap
ChIP K562 ENCFF513FTZ 225 bp overlap
ChIP SH-SY5Y ENCFF485YIB 285 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 331 bp overlap
ChIP SK-N-SH ENCFF764OZD 314 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 277 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 272 bp overlap
GATA3 15 datasets
ChIP BE2C GSE65664.GATA3.BE2C 241 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 316 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 287 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 287 bp overlap
ChIP MCF-7 ENCFF352QVM 353 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 168 bp overlap
ChIP MCF-7 GSE117492.GATA3.MCF-7 239 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 318 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 238 bp overlap
ChIP NGP GSE65664.GATA3.NGP 158 bp overlap
ChIP SH-SY5Y ENCFF475HYF 370 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 337 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 197 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 235 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 220 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 477 bp overlap
ChIP DE DE-GATA4-2 573 bp overlap
ChIP foregut GSE117136.GATA4.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 349 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 410 bp overlap
ChIP DE DE-GATA6-2 536 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 456 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 452 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 502 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 435 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 619 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
GLIS2 1 dataset
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 458 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 547 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 392 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 215 bp overlap
ISL2 2 datasets
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 151 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 381 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 478 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 531 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NFKB1 1 dataset
Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap
NKX2-3 2 datasets
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 304 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 225 bp overlap
Nkx3-1 2 datasets
Motif DE_48h DE_48h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_72h DE_72h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 2 datasets
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 324 bp overlap
PHOX2A 2 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 283 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 619 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 136 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
RELA 1 dataset
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 300 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 263 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 204 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 447 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 407 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 470 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 430 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 414 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 219 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 190 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 447 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 381 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 277 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 405 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 534 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 242 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 253 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 210 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 220 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 390 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF7L1 2 datasets
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 260 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 283 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 320 bp overlap
TFAP2C 3 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 107 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 250 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 269 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 120 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 109 bp overlap
ZNF16 1 dataset
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF354C 2 datasets
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap