chr9 : 105,302,583 – 105,303,463
880 bp 70 TFs 3 linked genes
This 880 bp open chromatin element is linked to SLC44A1, FSD1L, and FKTN and is bound by 70 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SLC44A1 58.3 kb Distal Multiome
FSD1L 145.1 kb Distal Multiome
FKTN 255.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:105,297,583 – 105,308,463
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ATF4 3 datasets
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 241 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 375 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 161 bp overlap
CDX2 3 datasets
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
Motif DE_48h DE_48h-CDX2_MA0465.3 8 bp overlap
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CEBPB 3 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 198 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 158 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
CEBPG 2 datasets
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
CREB1 2 datasets
Motif DE_48h DE_48h-CREB1_MA0018.5 8 bp overlap
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 257 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
ChIP BLaER1 ENCFF896HSY 281 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 390 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 220 bp overlap
ChIP DE DE-FOXA2-1 603 bp overlap
ChIP DE DE-FOXA2-2 638 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 351 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 307 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 153 bp overlap
GATA2 3 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 289 bp overlap
ChIP DE DE-GATA4-1 856 bp overlap
ChIP DE DE-GATA4-2 880 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 349 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 403 bp overlap
GATA5 3 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 877 bp overlap
ChIP DE DE-GATA6-2 880 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 490 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 625 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 631 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 880 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 665 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 674 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 539 bp overlap
Gata3 3 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
JUN 8 datasets
Motif DE_48h DE_48h-JUN_MA0488.2 10 bp overlap
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 445 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 276 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 362 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 708 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 671 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 546 bp overlap
JUND 2 datasets
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 242 bp overlap
Lhx3 2 datasets
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MEF2C 3 datasets
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 199 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 420 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 244 bp overlap
ChIP K562 ENCFF047YKA 405 bp overlap
NFIL3 2 datasets
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NR1D2 1 dataset
Motif DE_48h DE_48h-NR1D2_MA1532.2 15 bp overlap
NR4A2::RXRA 3 datasets
Motif DE_36h DE_36h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_48h DE_48h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_60h DE_60h-NR4A2RXRA_MA1147.2 13 bp overlap
PBX3 2 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
Prdm15 3 datasets
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
SIX1 3 datasets
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 200 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 858 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 645 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 477 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 310 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 532 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 357 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 880 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 880 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 282 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 521 bp overlap
SOX9 2 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SPIB 1 dataset
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Six4 3 datasets
Motif DE_36h DE_36h-Six4_MA2001.2 7 bp overlap
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Spi1 1 dataset
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
TCF7L1 1 dataset
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB26 2 datasets
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZFP42 1 dataset
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF324 1 dataset
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF460 2 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF547 2 datasets
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF701 1 dataset
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
ZNF766 3 datasets
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
ChIP HEK293T GSE78099.ZNF766.HEK293T 256 bp overlap
ChIP K562 ENCFF348LDO 605 bp overlap
ZNF770 2 datasets
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap