chr9 : 113,411,295 – 113,411,475
180 bp 65 TFs 2 linked genes
This 180 bp open chromatin element is linked to C9orf43 and POLE3 and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C9orf43 554 bp At TSS Proximity
POLE3 913 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:113,406,295 – 113,416,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 74 bp overlap
AR 1 dataset
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 104 bp overlap
BRD2 5 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 58 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 69 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 50 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 50 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 60 bp overlap
BRD4 17 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 85 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 100 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 106 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 75 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 75 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 63 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 70 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 71 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 56 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 51 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 50 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 88 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 60 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 75 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 68 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 58 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 180 bp overlap
BRD9 1 dataset
ChIP K562 ENCFF480JXZ 104 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 180 bp overlap
CTCF 3 datasets
ChIP brain ENCFF163BBN 148 bp overlap
ChIP thyroid gland ENCFF631QRY 145 bp overlap
ChIP transverse colon ENCFF077CMZ 88 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCFF692OYJ 180 bp overlap
E2F4 1 dataset
Motif DE_72h DE_72h-E2F4_MA0470.3 13 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 60 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF872AQB 98 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 104 bp overlap
ChIP K562 ENCFF541ZGX 94 bp overlap
KDM5B 1 dataset
ChIP K562 ENCFF049WWX 125 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 180 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 71 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 58 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 166 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 118 bp overlap
MXI1 1 dataset
ChIP K562 ENCFF336XYS 158 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 85 bp overlap
NELFA 1 dataset
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 91 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 104 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 71 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 76 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 62 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 66 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 62 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 88 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 108 bp overlap
POLR2A 8 datasets
ChIP A549 ENCFF748RAW 180 bp overlap
ChIP GM15510 ENCFF880HVJ 180 bp overlap
ChIP GM18505 ENCFF311CYB 180 bp overlap
ChIP GM18951 ENCFF079KKO 175 bp overlap
ChIP MCF-7 ENCFF411WCU 180 bp overlap
ChIP MCF-7 ENCFF411WCU 58 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 119 bp overlap
ChIP thyroid gland ENCFF979LRR 180 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 88 bp overlap
ChIP K562 ENCFF967GRF 89 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 180 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 50 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 153 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 165 bp overlap
ChIP K562 ENCFF506JCB 174 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 78 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 180 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 83 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 103 bp overlap
SRF 1 dataset
ChIP K562 ENCFF766EOO 180 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 61 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF254RJL 180 bp overlap
YY1 8 datasets
ChIP GM12878 ENCFF908JTL 180 bp overlap
ChIP GM12891 ENCFF460SIS 56 bp overlap
ChIP K562 ENCFF660QRE 180 bp overlap
ChIP SK-N-SH ENCFF087JSD 180 bp overlap
ChIP SK-N-SH ENCFF087JSD 84 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 57 bp overlap
ChIP liver ENCFF515BWJ 156 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 102 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 129 bp overlap
ZHX2 1 dataset
ChIP MCF-7 ENCFF733XRY 159 bp overlap
ZKSCAN8 2 datasets
ChIP K562 ENCFF387ETI 180 bp overlap
ChIP K562 ENCFF866TZL 78 bp overlap
ZNF135 3 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 130 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 180 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 180 bp overlap
ChIP HepG2 ENCFF256AZN 180 bp overlap
ZNF384 6 datasets
ChIP HEK293T ENCFF019DZX 156 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 75 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 73 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 51 bp overlap
ChIP K562 ENCFF365NXQ 180 bp overlap
ChIP K562 ENCFF365NXQ 94 bp overlap
ZNF417 1 dataset
Motif DE_72h DE_72h-ZNF417_MA1727.2 7 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 180 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 127 bp overlap