chr9 : 117,403,197 – 117,404,193
996 bp 64 TFs 0 linked genes
This 996 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:117,398,197 – 117,409,193
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 6 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 204 bp overlap
ChIP breast_tumor_Male_18 GSE104399.AR.breast_tumor_Male_18 316 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 239 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 348 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 239 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 143 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 118 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 167 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 424 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 918 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 243 bp overlap
BRD4 13 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 108 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 299 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 790 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 467 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 481 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 290 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 302 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 377 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 996 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 996 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD2 3 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 838 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF442YDO 391 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCFF829RWA 256 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 352 bp overlap
ChIP tibial nerve ENCFF346AYA 322 bp overlap
ESR1 9 datasets
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 472 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 314 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 388 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 441 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 208 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 240 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 191 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 317 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 204 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 228 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 208 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 465 bp overlap
FOXA1 4 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 232 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 216 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 75 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 218 bp overlap
GATA2 8 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCFF485YIB 282 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 309 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 261 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 301 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 159 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 162 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 130 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 264 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 144 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 199 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 177 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 300 bp overlap
GATA6 5 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 309 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 265 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 359 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 280 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 553 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 996 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 469 bp overlap
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 265 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 202 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 178 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 270 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 808 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 704 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 679 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 70 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 393 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 596 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 654 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 868 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 366 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 850 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 227 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 149 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 895 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 638 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 868 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 149 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 342 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 277 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 327 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 87 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
OLIG2 4 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 301 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 713 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 442 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 305 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 410 bp overlap
PGR 5 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 211 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 226 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 644 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 309 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 288 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 197 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 277 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 301 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 329 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 552 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 174 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 183 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 434 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 356 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 416 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 206 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 536 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 952 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 775 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 434 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 400 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 253 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 779 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 489 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 374 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 268 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 430 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 116 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 336 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 849 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 987 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 987 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 140 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 122 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 575 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap