chr9 : 131,807,487 – 131,807,943
456 bp 104 TFs 4 linked genes
This 456 bp open chromatin element is linked to 4 target genes and is bound by 104 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAPGEF1 67.6 kb Distal Multiome
MED27 272.1 kb Distal Multiome
UCK1 276.5 kb Distal Multiome
NTNG2 354.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:131,802,487 – 131,812,943
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 456 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 355 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 102 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 259 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 456 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 456 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 244 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 168 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 456 bp overlap
ChIP hESC GSE33281.BRD4.hESC 69 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 216 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 204 bp overlap
CHD7 2 datasets
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 122 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 266 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 286 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 284 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCFF829RWA 67 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ETS1 3 datasets
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 316 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 187 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 158 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 287 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 182 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 297 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 223 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 455 bp overlap
GATA6 4 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 291 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 348 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 232 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 113 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 320 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 301 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 128 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 290 bp overlap
ChIP WTC11 ENCFF223QFY 456 bp overlap
ChIP WTC11 ENCFF223QFY 229 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MYBL1 1 dataset
Motif DE_12h DE_12h-MYBL1_MA0776.1 12 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 320 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 222 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 335 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 337 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 213 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 312 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 326 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 105 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 111 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 150 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 201 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 456 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 456 bp overlap
PDX1 6 datasets
ChIP H9 ERP004206.PDX1.H9 319 bp overlap
ChIP hESC GSE58685.PDX1.hESC 295 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 456 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 456 bp overlap
ChIP islet ERP001456.PDX1.islet 115 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 395 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 412 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 238 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 405 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 336 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 456 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 456 bp overlap
RARA 2 datasets
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 276 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 341 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 331 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 3 datasets
ChIP LNCaP GSE119385.REST.LNCaP 77 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 172 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 259 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 204 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 273 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 347 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 112 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 192 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 297 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 158 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 311 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 430 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 317 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 179 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 323 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 293 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 267 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 221 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 312 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 418 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 245 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 134 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 341 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 374 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 257 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 124 bp overlap