chr9 : 136,946,106 – 136,946,610
504 bp 123 TFs 3 linked genes
This 504 bp open chromatin element is linked to C8G, FBXW5, and LCN12 and is bound by 123 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C8G 922 bp At TSS Proximity
FBXW5 1.5 kb Proximal Proximity
LCN12 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:136,941,106 – 136,951,610
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 348 bp overlap
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 261 bp overlap
AGO1 6 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 115 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 338 bp overlap
ChIP HepG2 ENCFF358CXO 209 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 134 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 77 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 214 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 134 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 63 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 378 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 92 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 372 bp overlap
ARID4A 2 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF142DIE 416 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 211 bp overlap
BATF2 2 datasets
ChIP HepG2 ENCFF442RPJ 282 bp overlap
ChIP HepG2 ENCFF442RPJ 501 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 235 bp overlap
BRD4 10 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 223 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 113 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 85 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 236 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 289 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 176 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 284 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 303 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 120 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 273 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 155 bp overlap
CDK9 2 datasets
ChIP HCT-116 GSE72622.CDK9.HCT-116 229 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 82 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 238 bp overlap
CSRNP1 1 dataset
ChIP HepG2 ENCFF191UYG 277 bp overlap
CTCF 6 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 299 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP HepG2 ENCFF757EKU 238 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 229 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 116 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 198 bp overlap
DNMT3B 3 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 139 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 216 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 105 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 115 bp overlap
EED 1 dataset
ChIP HepG2 ENCFF347CCA 272 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 289 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 161 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 313 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 156 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 50 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 99 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 328 bp overlap
HMGN3 1 dataset
ChIP K562 ENCFF083BIJ 297 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF671UYF 130 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 108 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 94 bp overlap
HOXA3 3 datasets
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 254 bp overlap
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF374TCI 186 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 471 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 150 bp overlap
KDM3A 4 datasets
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 70 bp overlap
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF077DXQ 184 bp overlap
ChIP HepG2 ENCFF077DXQ 466 bp overlap
KDM5B 2 datasets
ChIP HepG2 ENCFF706LUI 345 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 79 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 131 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 162 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 69 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 254 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 166 bp overlap
MAX 7 datasets
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 193 bp overlap
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF507HCX 199 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 59 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 317 bp overlap
ChIP liver ENCFF092GVW 122 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 97 bp overlap
MAZ 1 dataset
ChIP HeLa-S3 ENCSR000ECL.MAZ.HeLa-S3 106 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 248 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 144 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 158 bp overlap
MNT 3 datasets
ChIP Hep-G2 ENCSR730TBC.MNT.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF502ATV 225 bp overlap
ChIP K562 ENCFF820IGH 357 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 239 bp overlap
MXD4 2 datasets
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 130 bp overlap
ChIP HepG2 ENCFF308ELA 290 bp overlap
MYC 1 dataset
ChIP HepG2 ENCFF575FXK 280 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 81 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 63 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 157 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 160 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 436 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 205 bp overlap
NFKB2 1 dataset
ChIP HepG2 ENCFF165NTY 225 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 168 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 369 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 127 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 237 bp overlap
ChIP HepG2 ENCFF447SRJ 500 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 342 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 260 bp overlap
POLR2G 3 datasets
ChIP K562 ENCFF047BLG 458 bp overlap
ChIP K562 ENCFF648YPL 51 bp overlap
ChIP K562 ENCFF648YPL 458 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 209 bp overlap
RBFOX2 5 datasets
ChIP HepG2 ENCFF554DMZ 348 bp overlap
ChIP HepG2 ENCFF939HTZ 348 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 200 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 128 bp overlap
ChIP K562 ENCFF967GRF 249 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 381 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 381 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 100 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 317 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 476 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 245 bp overlap
SAFB 1 dataset
ChIP K562 ENCFF765XSF 371 bp overlap
SMAD1 4 datasets
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 297 bp overlap
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 51 bp overlap
ChIP HepG2 ENCFF892OZT 451 bp overlap
ChIP HepG2 ENCFF892OZT 252 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 275 bp overlap
ChIP HepG2 ENCFF931FHV 234 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 504 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 448 bp overlap
SRSF1 3 datasets
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 250 bp overlap
ChIP HepG2 ENCFF509LHO 83 bp overlap
ChIP HepG2 ENCFF509LHO 362 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 62 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 117 bp overlap
STAT3 1 dataset
ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 450 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 191 bp overlap
TAF15 3 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 504 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 504 bp overlap
ChIP HepG2 ENCFF406BOT 147 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 268 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 155 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 504 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 109 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 200 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 273 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 209 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 164 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 185 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 189 bp overlap
USF1 3 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 60 bp overlap
ChIP HepG2 ENCFF201JKA 172 bp overlap
ChIP HepG2 ENCFF807KYJ 101 bp overlap
USF2 1 dataset
ChIP Hep-G2 GSE97661.USF2.Hep-G2 125 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 383 bp overlap
ZBTB4 1 dataset
ChIP HepG2 ENCFF828GZH 504 bp overlap
ZBTB40 1 dataset
ChIP HepG2 ENCFF130IRD 461 bp overlap
ZBTB48 2 datasets
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 250 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 120 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 156 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 129 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 106 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 109 bp overlap
ZFX 3 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 502 bp overlap
ChIP HepG2 ENCFF016NZF 467 bp overlap
ChIP K562 ENCFF536AJO 497 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 60 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 165 bp overlap
ZHX1 2 datasets
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 169 bp overlap
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 55 bp overlap
ZHX2 2 datasets
ChIP Hep-G2 ENCSR407BEZ.ZHX2.Hep-G2 182 bp overlap
ChIP HepG2 ENCFF878CNQ 186 bp overlap
ZNF224 1 dataset
ChIP HepG2 ENCFF298FFZ 309 bp overlap
ZNF235 1 dataset
ChIP HepG2 ENCFF831SQZ 161 bp overlap
ZNF263 2 datasets
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 108 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 229 bp overlap
ZNF274 2 datasets
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 163 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 255 bp overlap
ZNF485 1 dataset
ChIP HepG2 ENCFF360UPH 238 bp overlap
ZNF589 1 dataset
ChIP HepG2 ENCFF700GKM 275 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 504 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 83 bp overlap
ZNF724 1 dataset
ChIP HepG2 ENCFF318TJD 154 bp overlap