chr1 : 184,244,558 – 184,245,746
1,188 bp 42 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to C1orf21 and TSEN15 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C1orf21 141.8 kb Distal Multiome
TSEN15 193.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:184,239,558 – 184,250,746
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 224 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 278 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
ChIP hESC GSE26097.EOMES.hESC 169 bp overlap
FOS 1 dataset
Motif DE_72h DE_72h-FOS_MA1951.2 13 bp overlap
FOS::JUN 1 dataset
Motif DE_72h DE_72h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1188 bp overlap
ChIP DE DE-FOXA2-2 1188 bp overlap
FOXH1 1 dataset
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 1188 bp overlap
ChIP DE DE-GATA4-2 1188 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 296 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 765 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 189 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 272 bp overlap
ChIP DE DE-GATA6-1 1188 bp overlap
ChIP DE DE-GATA6-2 1188 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 850 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 946 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1188 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1188 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 893 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 875 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 827 bp overlap
ChIP foregut GSE117136.GATA6.foregut 257 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 697 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 300 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 201 bp overlap
HSF4 1 dataset
Motif DE_72h DE_72h-HSF4_MA0771.1 13 bp overlap
JUN 3 datasets
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 375 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 373 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 217 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 142 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 346 bp overlap
SIX1 1 dataset
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 279 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 248 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1163 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 895 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 716 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1016 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 398 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 924 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1157 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 200 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 265 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 241 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 809 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 129 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 633 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
TOP2A 1 dataset
ChIP K-562_pBQ GSE79593.TOP2A.K-562_pBQ 129 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZNF157 1 dataset
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
Zfx 1 dataset
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap