chr10 : 98,601,370 – 98,602,074
704 bp 96 TFs 3 linked genes
This 704 bp open chromatin element is linked to HPSE2, HPS1, and PYROXD2 and is bound by 96 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HPSE2 142.4 kb Distal Multiome
HPS1 154.8 kb Distal Multiome
PYROXD2 186.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:98,596,370 – 98,607,074
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BHLHE22 2 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 248 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
E2F7 2 datasets
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
Motif DE_48h DE_48h-E2F7_MA0758.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 431 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 229 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 499 bp overlap
ChIP DE DE-FOXA2-2 704 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 608 bp overlap
ChIP DE DE-GATA4-2 670 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 397 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 595 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 594 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 644 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 471 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 601 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
GRHL1 1 dataset
Motif DE_36h DE_36h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 145 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA4 1 dataset
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXC4 1 dataset
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
IKZF1 2 datasets
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 422 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MXI1 2 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 211 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NEUROG2 1 dataset
Motif DE_36h DE_36h-NEUROG2_MA0669.1 10 bp overlap
NHLH1 2 datasets
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Olig2 2 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
POU6F1 1 dataset
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 322 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 704 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 590 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 498 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 411 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 565 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 452 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 704 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 630 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 319 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 311 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 249 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 437 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Six3 2 datasets
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_36h DE_36h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0815.1 13 bp overlap
Tcf12 2 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Vdr 2 datasets
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
Yy1 1 dataset
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF320 2 datasets
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 245 bp overlap
ZNF547 1 dataset
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
ZNF692 2 datasets
Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap