chr10 : 129,985,548 – 129,985,944
396 bp 16 TFs 3 linked genes
This 396 bp open chromatin element is linked to EBF3, GLRX3, and LINC02666 and is bound by 16 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EBF3 26.0 kb Distal Multiome
GLRX3 150.6 kb Distal Multiome
LINC02666 200.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:129,980,548 – 129,990,944
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 396 bp overlap
ChIP DE DE-FOXA2-2 396 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 396 bp overlap
ChIP DE DE-GATA4-2 396 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 396 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
SIX1 1 dataset
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 396 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 396 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 396 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 363 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 396 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Six4 1 dataset
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap