chr11 : 13,023,116 – 13,023,827
711 bp 69 TFs 2 linked genes
This 711 bp open chromatin element is linked to RASSF10 and LINC00958 and is bound by 69 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RASSF10 14.2 kb Distal Multiome
LINC00958 34.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:13,018,116 – 13,028,827
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 211 bp overlap
Arid5a 2 datasets
Motif DE_48h DE_48h-Arid5a_MA0602.2 8 bp overlap
Motif DE_60h DE_60h-Arid5a_MA0602.2 8 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 268 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 189 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 79 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 63 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 174 bp overlap
CTCF 2 datasets
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 50 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 140 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 316 bp overlap
ERF::FIGLA 1 dataset
Motif DE_60h DE_60h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 79 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 380 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 303 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 305 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 287 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 243 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 211 bp overlap
ChIP MCF-7 GSE119702.ESR1.MCF-7 147 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 229 bp overlap
ChIP MCF-7 GSE60270.ESR1.MCF-7 142 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 259 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 277 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 288 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 312 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 349 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 272 bp overlap
ChIP MCF-7_E2 GSE119702.ESR1.MCF-7_E2 147 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 179 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 367 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 345 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 183 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 182 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 332 bp overlap
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 164 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 218 bp overlap
ChIP MCF-7_ESR1_wildtype GSE100074.ESR1.MCF-7_ESR1_wildtype 200 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 354 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 221 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 266 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 364 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 183 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 138 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 353 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 367 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 379 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 335 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 259 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 131 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 103 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 137 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 164 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 345 bp overlap
ChIP MCF-7_Sat-H3B-6545 GSE115607.ESR1.MCF-7_Sat-H3B-6545 194 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 328 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 171 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 339 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 386 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 208 bp overlap
ChIP MCF-7_estradiol-Dex_75min GSE99626.ESR1.MCF-7_estradiol-Dex_75min 116 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 312 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 396 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 370 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 339 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 368 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 273 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 330 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 258 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 343 bp overlap
ChIP MCF-7_shCtrl GSE128445.ESR1.MCF-7_shCtrl 224 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 200 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 265 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 265 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 216 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 216 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 284 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 318 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 204 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 267 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 584 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 369 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 308 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 361 bp overlap
ChIP ZR751_E2_TAM ERP000380.ESR1.ZR751_E2_TAM 284 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 339 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 221 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 162 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 308 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 244 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 226 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 183 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 568 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_talen GSE94493.ESR1_Y537N.MCF-7_talen 159 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 195 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 353 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
FOXA1 13 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 303 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 136 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 139 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 172 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 200 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 128 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 151 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 206 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 407 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 320 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 336 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 206 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 545 bp overlap
ChIP DE DE-FOXA2-2 711 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 253 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 245 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 239 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 141 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 629 bp overlap
ChIP DE DE-GATA4-2 604 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 611 bp overlap
ChIP DE DE-GATA6-2 566 bp overlap
GRHL2 2 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 226 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 194 bp overlap
Gfi1B 2 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 405 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
KDM1A 2 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 96 bp overlap
ChIP K562 ENCFF128TYE 227 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NFIA 2 datasets
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NR2C1 2 datasets
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 265 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 164 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 185 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 224 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 169 bp overlap
Nr1H2 2 datasets
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 1 dataset
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 203 bp overlap
POU2F3 1 dataset
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
RELA 2 datasets
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 193 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 451 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 3 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 353 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 410 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 383 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 288 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 267 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 354 bp overlap
SMARCB1 2 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 313 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 233 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 348 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 272 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 421 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 483 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 181 bp overlap
TASOR 1 dataset
ChIP HeLa GSE95451.TASOR.HeLa 665 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 202 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 387 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 409 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 217 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
Tcf21 1 dataset
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 201 bp overlap
ZNF143 1 dataset
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF76 1 dataset
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
Huangfu Lab · Publications · Resources · Contact